Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865380:139865405:[+] chr2:196892747:196892774:[-] nonBSJ supported CDS

circRNA 5':CGGGUCUUC--CAGCGACUUCAAGUCUU 3'


            |:|||| ||||: ||| |:||


target  3':ACUCAGAUUCAGUCGUAGAACAACGGAU 5'

 -17.90 15 RIC-seq
chrX:139866672:139866721:[+] chr2:196726575:196726629:[-] nonBSJ supported CDS

circRNA 5':CCAC--GUCUUC-CAG-CAUCUC-UGUGUCUUCCAGCAUCUUCAUG-UCUUCCAAC 3'


            ||| ||| ||| |||||| |:| ||:|| :||| |||| ||||||||


target  3':UGUGUACAGCUAUGUCGGUAGAGCAUAAAGGAGACUGUA-AAGUUAAAGAAGGUUC 5'

 -37.40 15 RIC-seq
chrX:139866672:139866721:[+] chr2:196726577:196726629:[-] nonBSJ supported CDS

circRNA 5':CCACGUCUUC-CAG-CAUCUC-UGUGUCUUCCAGCAUCUUCAUG-UCUUCCAAC 3'


            || ||| ||| |||||| |:| ||:|| :||| |||| ||||||||


target  3':UGUACAGCUAUGUCGGUAGAGCAUAAAGGAGACUGUA-AAGUUAAAGAAGGUUC 5'

 -36.80 1 RIC-seq