Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865668:139865720:[+]	chr6:64401838:64401917:[+]	nonBSJ supported	CDS	circRNA 5':UCCAUGU-CUUC-CAGAAAAAUCUGUG--------UCUUCCACCA---------------AAUCCAAGUC-UUC-CAGUA 3' \|\| \|\|\| \|\|\|\| \| \|\|\|\|:\|: \|\|\| \|\| \|\|\|\|\|\|\|\|: \|\|\| \|\| \| target 3':UGGAACACGAAGUGACAUAGUAGAUAUAUAAACCAAGAUAGUAAACAACACACAAAACUAUUAGGUUCGAAAAGUGUGAG 5'	-23.10	21	RIC-seq
chrX:139865704:139865720:[+]	chr6:64401838:64401857:[+]	nonBSJ supported	CDS	circRNA 5': AUCCAAGUC-UUC-CAGUA 3' \|\|\|\|\|\|\|: \|\|\| \|\| \| target 3':UUAGGUUCGAAAAGUGUGAG 5'	-12.40	11	RIC-seq
chrX:139865934:139865958:[+]	chr6:64401704:64401722:[+]	nonBSJ supported	CDS	circRNA 5':AUGUCUUCCUGAAGAUCCACGUCUU 3' \|\|\|\|\|\|\|\|\| \|\| \|:\|\|\| target 3':AACAGAAGGAGC----GG-GUAGA 5'	-19.00	7	RIC-seq
chrX:139866481:139866524:[+]	chr6:64401807:64401856:[+]	nonBSJ supported	CDS	circRNA 5':UUCCAACAAAGGUACGUCUUCCAGAAAA-----UCCACGUCUUC---CAACC 3' \|\|\|\|\| :\|\|: \| \|\|\|\| \|\|\|\|\| \|\|\|\| target 3':UAGGUUCGAAAAGUGU-G-AGGUAACAAAAUAGAGGUGAUACCUUAAGUUGA 5'	-18.20	12	RIC-seq
chrX:139866481:139866529:[+]	chr6:64401801:64401856:[+]	nonBSJ supported	CDS	circRNA 5':UUCCAACAAAGGUACGUCUUCCAGAAAA-----UCCACGUCUUC---CAACCA-AGCC 3' \|\|\|\|\| :\|\|: \| \|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\| target 3':UAGGUUCGAAAAGUGU-G-AGGUAACAAAAUAGAGGUGAUACCUUAAGUUGACAUCGA 5'	-20.40	10	RIC-seq
chrX:139866503:139866540:[+]	chr6:64401821:64401861:[+]	nonBSJ supported	CDS	circRNA 5':AGAAAAUCCACGUC-UUC-CAA-CCAAGCCA-UGUCUUCCAG 3' \|\| \|\|\|\|\|\| \|: \|\|\| \|\| \|\|\| \|:\|\| \|\|\|\| target 3':ACUAUUAGGUUCGAAAAGUGUGAGGUAACAAAAUAG-AGGUG 5'	-19.20	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr6:64401838:64401917:[+]	target	-	chr6:64401892-64401893	A>G	LINC-JP	ICGC