Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865796:139865832:[+] chr1:67091547:67091590:[+] nonBSJ supported CDS

circRNA 5':CAAUCAGUGUCU-----------------UCCAGAAAGAAAUCCAGGUCUUCCA 3'


            ||||||||||: ||||: |||:|||||


target  3':CUUAGUCACAGGAAAAGAAAGAAGGCAUAAGGUU----------UCCGGAAGGA 5'

 -31.20 1 RIC-seq
chrX:139865796:139865840:[+] chr1:67091529:67091590:[+] nonBSJ supported CDS

circRNA 5':CAAUCAGUGUCU-----------------UCCAGAAAGAAAUCCAGGUCUUCCAG----------UCAGUCA 3'


            ||||||||||: ||||: |||:||||| |||:||


target  3':CUUAGUCACAGGAAAAGAAAGAAGGCAUAAGGUU----------UCCGGAAGGAACAUGCAAAAAAGUUAGG 5'

 -34.20 3 RIC-seq
chrX:139865796:139865850:[+] chr1:67091547:67091590:[+] nonBSJ supported CDS

circRNA 5':CAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGU-GUCUUCCA 3'


            ||||||||||:| |||||| || :||: |:|||||


target  3':CUUAGUCACAGGAAAAGAA-----------AGAAGG-CAUAAGGUUUCCGGAAGGA 5'

 -34.70 38 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:67091529:67091590:[+] target - chr1:67091548-67091549 G>A LINC-JP ICGC
chr1:67091547:67091590:[+] target - chr1:67091548-67091549 G>A LINC-JP ICGC