Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865542:139865580:[+] chr6:90572300:90572324:[+] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAGCAAUUACUGGUCUUCCACCAAAUCCAG 3'


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target  3':AGUCAGAA-----------ACCAA---GUGGAAAUGGUA 5'

 -17.90 1 RIC-seq
chrX:139865542:139865580:[+] chr6:90572301:90572324:[+] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAGCAAUUACUGGUCUUCCACCAAAUCCAG 3'


            ||||||| |||| |||| |||


target  3':AGUCAGAA-----------ACCAA---GUGGAAAUGGU 5'

 -17.90 19 RIC-seq
chrX:139865542:139865587:[+] chr6:90572295:90572324:[+] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAGCAAUUACUGGUCUUCCACCAAAUCCAGAUCUUCC 3'


            ||||||| |||| |||| ||| |||


target  3':AGUCAGAA-----------ACCAA---GUGGAAAUGGUAUA-AAG 5'

 -18.60 22 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:90572295:90572324:[+] target - chr6:90572298-90572299 A>G LAML-KR ICGC