Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866420:139866440:[+] chr18:29178733:29178752:[+] nonBSJ supported 3UTR

circRNA 5':UUGUGUCUUCCAACAAAGGUA 3'


            || | |||| |||| :|:|


target  3':GAC-CUGAAGAUUGUA-UCGUA 5'

 -9.70 1 RIC-seq
chrX:139866420:139866441:[+] chr18:29178733:29178752:[+] nonBSJ supported 3UTR

circRNA 5':UUGUGUCUUCCAACAAAGGUAC 3'


            || | |||| |||| :|:|


target  3':GAC-CUGAAGAUUGUA-UCGUA 5'

 -10.00 1 RIC-seq
chrX:139866459:139866480:[+] chr18:29178730:29178750:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAAAGGUAUGUC 3'


            | |||| |||| :|:||:|


target  3':CCUGAAGAUUGUA-UCGUAUAC 5'

 -12.50 2 RIC-seq
chrX:139866459:139866489:[+] chr18:29178718:29178749:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAAAG-GUAUGUCUUCC-AACAA 3'


            | |||| |||| || :|||| ||||


target  3': CUGAAGAUUGUAUCGUAUACUCCACUUUUGUG 5'

 -12.00 1 RIC-seq
chrX:139866459:139866489:[+] chr18:29178718:29178750:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAAAG-GUAUGUCUUCC-AACAA 3'


            | |||| |||| || :|||| ||||


target  3':CCUGAAGAUUGUAUCGUAUACUCCACUUUUGUG 5'

 -12.80 11 RIC-seq
chrX:139866459:139866519:[+] chr18:29178712:29178750:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUC 3'


            | |||| |||| :|:||:| |||| ||||| ||| |||


target  3':CCUGAAGAUUGUA-UCGUAUAC---------UCCA----------CUUUU--GUGACGAAA 5'

 -16.10 8 RIC-seq