Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865780:139865828:[+] chr15:77241446:77241488:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUCUUC--CAGAAAGAAAUCCAGGUCU 3'


            ||| ||| |||||| |:| ||||| |||| || |||


target  3':CAGGCCCAAAAGGUC------UUAGAGAAGAAGUCUCUCGAAAAA--CAGU 5'

 -28.50 1 RIC-seq
chrX:139865780:139865836:[+] chr15:77241440:77241488:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUCUUC--CAGAAAGAAAUCCAGGUCUUCCAGUCA 3'


            ||| ||| |||||| |:| ||||| |||| || ||| ||| ||


target  3':CAGGCCCAAAAGGUC------UUAGAGAAGAAGUCUCUCGAAAAA--CAGU-GGUAAG 5'

 -33.40 1 RIC-seq
chrX:139865780:139865838:[+] chr15:77241437:77241488:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUCUUC--CAGAAAGAAAUCCAGGUCUUCCAGUCAGU 3'


            ||| ||| |||||| |:| ||||| |||| || ||| ||| |||:


target  3':CAGGCCCAAAAGGUC------UUAGAGAAGAAGUCUCUCGAAAAA--CAGU-GGUAAGUUU 5'

 -34.50 24 RIC-seq
chrX:139865780:139865838:[+] chr15:77241438:77241488:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUCUUC--CAGAAAGAAAUCCAGGUCUUCCAGUCAGU 3'


            ||| ||| |||||| |:| ||||| |||| || ||| ||| |||:


target  3':CAGGCCCAAAAGGUC------UUAGAGAAGAAGUCUCUCGAAAAA--CAGU-GGUAAGUU 5'

 -34.50 1 RIC-seq
chrX:139865811:139865841:[+] chr15:77227867:77227899:[+] nonBSJ supported CDS

circRNA 5':AGAAAGAAAUCCAGGUCUUCCAGUC-AG-UCAG 3'


            |||||| ||| ::||: || |||


target  3':AUUUUCUGUAGACUUAGGUACUUGACUCAAGUG 5'

 -11.10 2 RIC-seq
chrX:139865811:139865850:[+] chr15:77227866:77227899:[+] nonBSJ supported CDS

circRNA 5':AGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCA 3'


            |||||| ||| |: |||| ||| || ||


target  3':AUUUUCUGUAGA-CUU--AGGUACUUGACUCA-AGU-GG 5'

 -12.90 14 RIC-seq