Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866203:139866253:[+] chr1:212619372:212619425:[+] nonBSJ supported 3UTR

circRNA 5':UCCGGGUCUUCCAGGAAAU------CC--GUGUCUUCCAGCAAGUCCACGUCUUCCAAC 3'


            ||:| ||||| || || ||||||||| || |||| ||:||||


target  3':CGGUCAAAAC-GUCCUCUAAGUCGUGGAUCACAGAAGGACGGA---GUGC-GAGGGUUC 5'

 -40.40 13 RIC-seq
chrX:139866681:139866707:[+] chr1:212619383:212619407:[+] nonBSJ supported 3UTR

circRNA 5':CCAGCAUCUCUGUGUCUUCCAGCAUCU 3'


            |||||:|| ||||||||| || ||


target  3':AGUCGUGGAU-CACAGAAGGACGGAG 5'

 -32.40 18 RIC-seq
chrX:139866694:139866721:[+] chr1:212619372:212619396:[+] nonBSJ supported 3UTR

circRNA 5': GUCUUCCAGCAUCUUCAUGUCUUCCAAC 3'


            ||||||| || :|||:| ||:||||


target  3':ACAGAAGGACG---GAGUGC-GAGGGUUC 5'

 -28.60 44 RIC-seq
chrX:139866696:139866719:[+] chr1:212619335:212619366:[+] nonBSJ supported 3UTR

circRNA 5':CUUCC---------AGCAUCUUCAUGUCUUCCA 3'


            |||| |:|||| || |||


target  3':CGAGGACGUCCCCCUUGUAGUCUUG-AGUAGGA 5'

 -12.30 1 RIC-seq
chrX:139866699:139866719:[+] chr1:212619388:212619407:[+] nonBSJ supported 3UTR

circRNA 5':CCAGCAUCUUCAUGUCUUCCA 3'


            |||||:|| ||||||||


target  3':AGUCGUGGAUC-ACAGAAGGA 5'

 -25.30 3 RIC-seq
chrX:139865479:139865507:[+] chr1:212606418:212606447:[+] nonBSJ supported CDS

circRNA 5':CCGGACAAUCCAUGUCUUCCA-----AGAAGCUC 3'


            ||| ||| ||:||| |:||||:


target  3':CGCCC----GGUCGAGGAGGAGCCACUUUUCGGC 5'

 -18.00 1 RIC-seq
chrX:139865479:139865509:[+] chr1:212606416:212606447:[+] nonBSJ supported CDS

circRNA 5':CCGGACAAUCCAUGUCUUCCA-----AGAAGCUCCA 3'


            ||| ||| ||:||| |:||||: ||


target  3':CGCCC----GGUCGAGGAGGAGCCACUUUUCGGCGU 5'

 -18.30 14 RIC-seq
chrX:139865487:139865509:[+] chr1:212606416:212606443:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCA-----AGAAGCUCCA 3'


            ||| ||:||| |:||||: ||


target  3':CGGUCGAGGAGGAGCCACUUUUCGGCGU 5'

 -16.80 1 RIC-seq