Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865539:139865556:[+] chr1:171505375:171505398:[+] nonBSJ supported CDS

circRNA 5':AAUCCA------GUCUUCCA-GCAA 3'


            ||||| ||||||| :||


target  3': UAGGUAUCGUCCAGAAGGACUGUA 5'

 -14.90 1 RIC-seq
chrX:139865539:139865556:[+] chr1:171505375:171505399:[+] nonBSJ supported CDS

circRNA 5':AAUCCA------GUCUUCCA-GCAA 3'


            ||||| ||||||| :||


target  3':AUAGGUAUCGUCCAGAAGGACUGUA 5'

 -15.60 1 RIC-seq
chrX:139865546:139865568:[+] chr1:171557574:171557609:[+] nonBSJ supported CDS

circRNA 5': UCUUCCA---GCAAUU----ACUGGU----CUUC 3'


            |||: || ||| ||||| ||||


target  3':AAGAGUGUCACCGUCCCCGACUGACCUUGACGAAGA 5'

 -9.30 2 RIC-seq
chrX:139865937:139865954:[+] chr1:171553651:171553667:[+] nonBSJ supported CDS

circRNA 5':UCUUCCUGAAGAUCCACG 3'


            |:| ||| ||| |||


target  3':UGGACGACCUCUC-GUGA 5'

 -8.30 1 RIC-seq
chrX:139865967:139866000:[+] chr1:171553635:171553667:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAGAAAAUCCA-UGUCUUC-CAGUA 3'


            || || || ||| |: || || ||||


target  3':UGG-AC-GACC-UCUCGUGAACCACUGACCCGUCAC 5'

 -6.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:171557574:171557609:[+] target rs2421847 chr1:171557600-171557601 A>G Alzheimer GWAS Catalog