Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865532:139865555:[+]	chr1:46507718:46507741:[-]	nonBSJ supported	3UTR	circRNA 5':UCCAGCAAAUCCAGUCUUC-CAGCA 3' \|\|\|\| \|\| \| \|\| \| \|\|\|\| target 3':CGGUCCCAC-GGACUGACGUGUCGA 5'	-13.40	2	RIC-seq
chrX:139866269:139866319:[+]	chr1:46508139:46508207:[-]	nonBSJ supported	3UTR	circRNA 5':AGACUAUCCAUGUCUU----------------------------CCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCU 3' \|\|\|:\|: \|:\|:: \|\|\| \|\|\|\| \|\| \|\|:\|\|\| \|\|\| \|\|\|\| target 3':CCUGGUGUCC-CGGGGACCCAGACACUAAAUGACUCCGUGGACUGGUG--UUAG--ACUGAGGGG-----AGGAAUCGU 5'	-27.70	1	RIC-seq
chrX:139866379:139866396:[+]	chr1:46532705:46532721:[-]	nonBSJ supported	CDS	circRNA 5':CAAAGCCAUGUCUUCCAU 3' \|\|\|\|\|\|\|\|:\| \|\|\| target 3':UUUUCGGUAUAAAUGGU 5'	-15.60	2	RIC-seq
chrX:139866418:139866458:[+]	chr1:46521479:46521511:[-]	nonBSJ supported	CDS	circRNA 5':ACUUGUGUC-UUC-CAACAAAGGUAC--GUCUUCCAACAAAGGUA 3' \|\|:\| :\|\| \|\|\| \|\| \| \|\| \|\|\| \|\|\|\| target 3':AGAGCCUAGAAAGCGUCGA--CCUAGUCCAG---------UCCA 5'	-11.60	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866269:139866319:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC