Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866332:139866399:[+] chr1:150305164:150305224:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCCG-UGUC--UUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAA 3'


            || || |:| || | ||| |||| ||| || || || |:|||||||


target  3': CC-GAUUA-CUUCGAGUCGACAAAAAAGGAG----AGGAGCUAAACAGCACAACG--AC-GGAGGUAGUA 5'

 -25.30 1 RIC-seq
chrX:139866332:139866399:[+] chr1:150305164:150305225:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCCG-UGUC--UUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAA 3'


            || || |:| || | ||| |||| ||| || || || |:|||||||


target  3':CCC-GAUUA-CUUCGAGUCGACAAAAAAGGAG----AGGAGCUAAACAGCACAACG--AC-GGAGGUAGUA 5'

 -26.10 13 RIC-seq
chrX:139866340:139866399:[+] chr1:150305164:150305230:[+] nonBSJ supported CDS

circRNA 5':CAGGAAAUCC-GUGUCUUCCAGCAAA----UCCACGUCUUCCAACAAAGCCA-UGU--CUUCCAUCAA 3'


            ||| :|| |||| ||| | ||:|| ||: |:|||||||


target  3':AUCCCCCCGAUUACUUCGAGUCGACAAAAAAGGAG-AGGAGCUAAACAGCACAACGACGGAGGUAGUA 5'

 -24.70 1 RIC-seq
chrX:139866341:139866399:[+] chr1:150305164:150305230:[+] nonBSJ supported CDS

circRNA 5': AGGAAAUCC-GUGUCUUCCAGCAAA----UCCACGUCUUCCAACAAAGCCA-UGU--CUUCCAUCAA 3'


            ||| :|| |||| ||| | ||:|| ||: |:|||||||


target  3':AUCCCCCCGAUUACUUCGAGUCGACAAAAAAGGAG-AGGAGCUAAACAGCACAACGACGGAGGUAGUA 5'

 -24.60 12 RIC-seq
chrX:139866341:139866399:[+] chr1:150305165:150305218:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCG-UGUC--UUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAA 3'


            |:| || | ||| |||| ||| || || || |:|||||||


target  3':ACUUCGAGUCGACAAAAAAGGAG----AGGAGCUAAACAGCACAACG--AC-GGAGGUAGU 5'

 -24.40 1 RIC-seq
chrX:139866341:139866399:[+] chr1:150305165:150305230:[+] nonBSJ supported CDS

circRNA 5': AGGAAAUCC-GUGUCUUCCAGCAAA----UCCACGUCUUCCAACAAAGCCA-UGU--CUUCCAUCAA 3'


            ||| :|| |||| ||| | ||:|| ||: |:|||||||


target  3':AUCCCCCCGAUUACUUCGAGUCGACAAAAAAGGAG-AGGAGCUAAACAGCACAACGACGGAGGUAGU 5'

 -24.60 1 RIC-seq