Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865780:139865808:[+] chr1:205494268:205494293:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUCUU 3'


            ||||| |:|||: :||:|||||


target  3':AAGGUCAA-AGGGUUUC--GGUUACAGAC 5'

 -23.30 1 RIC-seq
chrX:139865819:139865842:[+] chr1:205494274:205494293:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAGUCAGU 3'


            ||||| |:|||: ||:||:


target  3':AAGGUCAA-AGGGUU--UCGGUU 5'

 -17.90 2 RIC-seq
chrX:139865819:139865843:[+] chr1:205494273:205494293:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAGUCAGUG 3'


            ||||| |:|||: ||:||:|


target  3':AAGGUCAA-AGGGUU--UCGGUUA 5'

 -19.40 15 RIC-seq
chrX:139865819:139865847:[+] chr1:205494268:205494293:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAGUCAGUGUCUU 3'


            ||||| |:|||: ||:||:|||||


target  3':AAGGUCAA-AGGGUU--UCGGUUACAGAC 5'

 -28.10 16 RIC-seq