Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865462:139865490:[+] chr1:70697253:70697273:[+] nonBSJ supported 5UTR

circRNA 5':CAGACAAUCCAUGUCUUCCGGACAAUCCA 3'


            |:|||| |||| | ||| |||


target  3':UUUUGUU--GUAC------CGUGUAAGGA 5'

 -11.70 1 RIC-seq
chrX:139865940:139865978:[+] chr1:70716464:70716503:[+] nonBSJ supported CDS

circRNA 5':UCCUGAAGAUCCACG--UCUUCCAGAAA-AUCCAUGUCUUCC 3'


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target  3': GGAG-UCUCCGUUAUAAGUCAGUGAGUAUAGGUACAGAAGA 5'

 -22.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:70716464:70716503:[+] target - chr1:70716481-70716482 G>T LICA-CN ICGC