Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866619:139866678:[+] chr1:65811334:65811392:[+] nonBSJ supported 5UTR

circRNA 5':CAGGUC--UUCC-AGCAUCUCCA-GGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUC 3'


            |||| |||| | | |||| :|:||:| ||::|||: || |||||||||


target  3':CUCCAACCAAGGAUGGGAGAGAAGUCUGAGGA----AGGUGAGUUUUUAACUG-AGAGGUGCAC 5'

 -44.20 2 RIC-seq
chrX:139866620:139866678:[+] chr1:65811334:65811392:[+] nonBSJ supported 5UTR

circRNA 5': AGGUC--UUCC-AGCAUCUCCA-GGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUC 3'


            |||| |||| | | |||| :|:||:| ||::|||: || |||||||||


target  3':CUCCAACCAAGGAUGGGAGAGAAGUCUGAGGA----AGGUGAGUUUUUAACUG-AGAGGUGCAC 5'

 -43.70 41 RIC-seq
chrX:139866620:139866678:[+] chr1:65811335:65811392:[+] nonBSJ supported 5UTR

circRNA 5': AGGUC--UUCC-AGCAUCUCCA-GGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUC 3'


            |||| |||| | | |||| :|:||:| ||::|||: || |||||||||


target  3':CUCCAACCAAGGAUGGGAGAGAAGUCUGAGGA----AGGUGAGUUUUUAACUG-AGAGGUGCA 5'

 -43.20 1 RIC-seq
chrX:139866632:139866678:[+] chr1:65811334:65811376:[+] nonBSJ supported 5UTR

circRNA 5':AUCUCCA-GGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUC 3'


            |||| :|:||:| ||::|||: || |||||||||


target  3':GAGAGAAGUCUGAGGA----AGGUGAGUUUUUAACUG-AGAGGUGCAC 5'

 -35.40 1 RIC-seq
chrX:139865652:139865676:[+] chr1:65830332:65830361:[+] nonBSJ supported CDS

circRNA 5':CAGAUCUUCC----AGCUAA--UCCAUGUCU 3'


            |||:||:|| |||| ||||||||


target  3':CUCUGGAGGGGGUAUCGACCCGAGGUACAG 5'

 -28.30 1 RIC-seq
chrX:139865652:139865702:[+] chr1:65830317:65830361:[+] nonBSJ supported CDS

circRNA 5':CAGAUCUUCC----AGCUAA--UCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCA 3'


            |||:||:|| |||| ||||||||| ||| || ||||


target  3':CUCUGGAGGGGGUAUCGACCCGAGGUACAGACC-UCU--------ACUCC--GUGG 5'

 -32.50 11 RIC-seq
chrX:139865780:139865827:[+] chr1:65831835:65831882:[+] nonBSJ supported CDS

circRNA 5': AUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUC-CAGGUC 3'


            |:|| ||: |||| || ||| |||:|


target  3':AUGGG-CCGACACUUUGAACCGUCA-AGCUAUUCUGAAUCCACUGUCUAA 5'

 -13.60 9 RIC-seq
chrX:139865784:139865827:[+] chr1:65831835:65831878:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUC-CAGGUC 3'


            ||: |||| || ||| |||:|


target  3':GCCGACACUUUGAACCGUCA-AGCUAUUCUGAAUCCACUGUCUAA 5'

 -10.00 1 RIC-seq
chrX:139865799:139865827:[+] chr1:65831835:65831863:[+] nonBSJ supported CDS

circRNA 5':UCAGUGUCUUCCAGAAAGAAAUC-CAGGUC 3'


            |||| || ||| |||:|


target  3':CGUCA-AGCUAUUCUGAAUCCACUGUCUAA 5'

 -7.50 1 RIC-seq
chrX:139865827:139865859:[+] chr1:65874343:65874372:[+] nonBSJ supported CDS

circRNA 5': CUU--CCAGUCAGUCAGUGUCUUCCAGAAAAAUCU 3'


            ||| |||| ||| || |||||| ||||||


target  3':GGAACUGGUCUCUCA-UC-CAGAAG----UUUUAGU 5'

 -20.00 16 RIC-seq
chrX:139865829:139865859:[+] chr1:65874343:65874367:[+] nonBSJ supported CDS

circRNA 5':UCCAGUCAGUCAGUGUCUUCCAGAAAAAUCU 3'


            |||| ||| || |||||| ||||||


target  3':UGGUCUCUCA-UC-CAGAAG----UUUUAGU 5'

 -19.70 2 RIC-seq
chrX:139865832:139865860:[+] chr1:65864526:65864553:[+] nonBSJ supported CDS

circRNA 5':AGUCAGUCAGUGUCUUCCAGAAAAAUCUA 3'


            |:||||| |:|||||||| ||||


target  3':ACGGUCAGGGUU-GGAGGUCUUUGUAGAC 5'

 -29.40 1 RIC-seq
chrX:139865832:139865880:[+] chr1:65864506:65864553:[+] nonBSJ supported CDS

circRNA 5':AGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGG 3'


            |:||||| |:|||||||| |||| || ||||


target  3':ACGGUCAGGGUU-GGAGGUCUUUGUAGACCGACUUACAAGUGUC-GUCCG 5'

 -32.20 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:65830317:65830361:[+] target 3646343 chr1:65830317-65830318 G>A Juvenile_onset_Parkinson_disease_19A ClinVar
chr1:65874343:65874372:[+] target 265964 chr1:65874368-65874369 C>T Juvenile_onset_Parkinson_disease_19A ClinVar
chr1:65874343:65874367:[+] target - chr1:65874347-65874348 T>A BTCA-JP ICGC
chr1:65874343:65874372:[+] target - chr1:65874347-65874348 T>A BTCA-JP ICGC