Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865762:139865794:[+] chr1:184597558:184597581:[+] nonBSJ supported 3UTR

circRNA 5':AGUGUCUU--CCAGAAAGAAAUCCAGGUCUUCCAG 3'


            |||: |||| |||| :|||


target  3':ACACGUGUAUGGUCC---------UCCAC-GGGU 5'

 -12.90 1 RIC-seq
chrX:139865801:139865833:[+] chr1:184597558:184597581:[+] nonBSJ supported 3UTR

circRNA 5':AGUGUCUU--CCAGAAAGAAAUCCAGGUCUUCCAG 3'


            |||: |||| |||| :|||


target  3':ACACGUGUAUGGUCC---------UCCAC-GGGU 5'

 -12.90 24 RIC-seq
chrX:139866742:139866776:[+] chr1:184476767:184476801:[+] nonBSJ supported CDS

circRNA 5':ACUGGCUCAAUAUCCAUG-UCUUCCAACGUCUCCAG 3'


            |||||| || ||||| |:| |||


target  3':GGACCGACGAUAAAAGACGAGAAGAAGACGG-GGUA 5'

 -22.20 8 RIC-seq