Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865389:139865424:[+] chr1:35654653:35654691:[-] nonBSJ supported CDS

circRNA 5': CA-GCGACUUCAAGUCUUCCAAUAAUCUCA--AGGUCUU 3'


            || ||| ||| |||||| ||||| ||:|||


target  3':GGUACGCAGAAUUA-AGAAGGACAGCAGAGUAGUCUAGAC 5'

 -25.00 2 RIC-seq
chrX:139865401:139865424:[+] chr1:35654666:35654691:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAAUAAUCUCA--AGGUCUU 3'


            |||||| ||||| ||:|||


target  3':AAGAAGGACAGCAGAGUAGUCUAGAC 5'

 -18.90 2 RIC-seq
chrX:139866587:139866612:[+] chr1:35653630:35653666:[-] nonBSJ supported CDS

circRNA 5':UCUUCCA----------ACAAAUC--CAUGUCUUCCUA 3'


            |||||| || |||| ||| |||||||


target  3': GAAGGUAGAGUGCAACUGCUUAGUAGUAGAGAAGGAG 5'

 -21.20 2 RIC-seq
chrX:139866669:139866741:[+] chr1:35653620:35653688:[-] nonBSJ supported CDS

circRNA 5':UCUCCACG--UCUUCCAGCAUCUC-UGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAA-CUACCCAG-UCUUCCAUCA 3'


            ||| ||||||| |||| :|| | ||| |||| |||||| |||| | ||:||| ||


target  3': GAGUAAACAAGAAGGU---AGAGUGCAACUG----CUUAGUAGUAGAGAAGGAGAGAAGAUGCAGCAAGGAGG-AGA 5'

 -42.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866587:139866612:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC