Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866568:139866620:[+]	chr1:112162509:112162557:[+]	nonBSJ supported	5UTR	circRNA 5':GUCUUCCAACUAAGCUACGUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCA 3' \|\|::\|\| \|\| \| \|\|:\|\|\|\| \|\|\|\|: \|\|:\|\|\| \|:\|\|\|\| target 3':GGGGGGGCCAGGCCGC-GGAGGAGGUGGAGGAGGUGGAGGAGG---UGGAGGA 5'	-44.90	22	RIC-seq
chrX:139866568:139866620:[+]	chr1:112162510:112162557:[+]	nonBSJ supported	5UTR	circRNA 5':GUCUUCCAACUAAGCUACGUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCA 3' \|\|::\|\| \|\| \| \|\|:\|\|\|\| \|\|\|\|: \|\|:\|\|\| \|:\|\|\|\| target 3':GGGGGGGCCAGGCCGC-GGAGGAGGUGGAGGAGGUGGAGGAGG---UGGAGG 5'	-45.10	7	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866568:139866620:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC