Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865782:139865800:[+] chr1:6204166:6204186:[-] nonBSJ supported 5UTR

circRNA 5':CCAGGUC-UUCCAGUCAAUC 3'


            |||||| ||||| | |||


target  3':CGUCCAGAAAGGUGAACUAGU 5'

 -18.00 24 RIC-seq
chrX:139865876:139865894:[+] chr1:6204166:6204186:[-] nonBSJ supported 5UTR

circRNA 5':CCAGGUC-UUCCAGUCAAUC 3'


            |||||| ||||| | |||


target  3':CGUCCAGAAAGGUGAACUAGU 5'

 -18.00 28 RIC-seq
chrX:139866759:139866792:[+] chr1:6240014:6240047:[-] nonBSJ supported 5UTR

circRNA 5': GUCUUC---CAACGUCUCCAGUGUGCUGAUCUUCUGA 3'


            |||:|| | |:||||| :| || || | |:|


target  3':GCAGGAGUAAGAGGUAGAGGA-GC-CG-CUUGUCGGC 5'

 -24.10 2 RIC-seq
chrX:139866759:139866792:[+] chr1:6240014:6240048:[-] nonBSJ supported 5UTR

circRNA 5': GUCUUC---CAACGUCUCCAGUGUGCUGAUCUUCUGA 3'


            |||:|| | |:||||| :| || || | |:|


target  3':GCAGGAGUAAGAGGUAGAGGA-GC-CG-CUUGUCGGCG 5'

 -24.30 1 RIC-seq
chrX:139866759:139866800:[+] chr1:6240014:6240044:[-] nonBSJ supported 5UTR

circRNA 5': GUCUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUU-CAGG 3'


            |||:|| |||||| |||:|| |||


target  3':GCAGGAGUA---AGAGGU---------AGAGGAGCCGCUUGUC 5'

 -22.40 1 RIC-seq
chrX:139866762:139866816:[+] chr1:6240015:6240048:[-] nonBSJ supported 5UTR

circRNA 5':UUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGCA 3'


            ||| |||||| ||:|| ||: ||| |:||


target  3':CAGGAGUAAGAGGUAG-------AGGAG---------CCGCUU-GUC---GGCG 5'

 -21.60 18 RIC-seq
chrX:139866614:139866660:[+] chr1:6170484:6170531:[-] nonBSJ supported CDS

circRNA 5': AUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCU---GCUCGUC 3'


            |||||||||| || :|| ||:|:|| :| ||||||


target  3':GUAGAGGUCCAUCAA--CG-GGAACACCUGGAGUCUGAACUUCCCGAGCAA 5'

 -36.40 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866759:139866800:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866762:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC