Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866093:139866138:[+] chr1:179042398:179042437:[+] nonBSJ supported 3UTR

circRNA 5':AGCCAU--GUCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUC 3'


            || :|||| |||| ||||||| |||||| |||::|


target  3':CCGAAUUUUAGAAACAA----AGGU-UAGAAGG-UACCGG-GGUUUA 5'

 -32.60 1 RIC-seq
chrX:139866093:139866139:[+] chr1:179042396:179042437:[+] nonBSJ supported 3UTR

circRNA 5':AGCCAU--GUCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCU 3'


            || :|||| |||| ||||||| |||||| |||::||


target  3':CCGAAUUUUAGAAACAA----AGGU-UAGAAGG-UACCGG-GGUUUAGU 5'

 -36.60 51 RIC-seq
chrX:139866093:139866139:[+] chr1:179042397:179042437:[+] nonBSJ supported 3UTR

circRNA 5':AGCCAU--GUCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCU 3'


            || :|||| |||| ||||||| |||||| |||::||


target  3':CCGAAUUUUAGAAACAA----AGGU-UAGAAGG-UACCGG-GGUUUAG 5'

 -36.60 1 RIC-seq
chrX:139866094:139866139:[+] chr1:179042396:179042437:[+] nonBSJ supported 3UTR

circRNA 5': GCCAU--GUCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCU 3'


            || :|||| |||| ||||||| |||||| |||::||


target  3':CCGAAUUUUAGAAACAA----AGGU-UAGAAGG-UACCGG-GGUUUAGU 5'

 -36.40 1 RIC-seq
chrX:139866098:139866139:[+] chr1:179042396:179042430:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCU 3'


            ||||| |||| ||||||| |||||| |||::||


target  3':UUAGAAACAA----AGGU-UAGAAGG-UACCGG-GGUUUAGU 5'

 -35.80 1 RIC-seq
chrX:139866105:139866139:[+] chr1:179042396:179042453:[+] nonBSJ supported 3UTR

circRNA 5':CAGAAAA--------------------------UCCACAUCUUCCAAUGGCCUCCAGGUCU 3'


            |||||| |||| ||||||| |||||| |||::||


target  3':UUCUUUUUUUCUUCUUCCGAAUUUUAGAAACAAAGGU-UAGAAGG-UACCGG-GGUUUAGU 5'

 -35.90 1 RIC-seq
chrX:139866092:139866143:[+] chr1:179012968:179013009:[+] nonBSJ supported CDS

circRNA 5':AAGCCAUGUCUUCCAGAAAAUCCACAUCUUCCAA-UGGCCUCCAGGUCUUCCA 3'


            || ||:| ||: |||| ||:|||| ||||


target  3':GUC-GUGCUGAGCGACGAAAUC-----GAAGUACAACUGGAGAA----AAGG 5'

 -18.70 1 RIC-seq