Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865562:139865610:[+] chr1:15890473:15890508:[+] nonBSJ supported CDS

circRNA 5':GGUC-UUC-CACCAAAUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGA 3'


            ||| :|| ||| ||| :|||: ||| ||||||||||


target  3':ACAGUGAGAGUG----AGGGUUAGGU--UCC---------CAGAAGGUCCC 5'

 -33.50 2 RIC-seq
chrX:139866274:139866320:[+] chr1:15863266:15863312:[+] nonBSJ supported CDS

circRNA 5': AUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUA---GCUU 3'


            |:||| |||||||| || |||| ||||:| |||:


target  3':AUGGGUUAAGAAGGUCAAGAACUUACUGAAGAA-----AGGUGUGUCCGAGC 5'

 -30.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866274:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC