Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865542:139865556:[+] chr1:55318035:55318052:[-] nonBSJ supported CDS

circRNA 5':CCAGUCUUC---CAGCAA 3'


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target  3':CGUCAGCCGUAUGUCGUA 5'

 -11.20 20 RIC-seq
chrX:139865971:139865997:[+] chr1:55318006:55318024:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


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target  3': UAGAGGGUCUUG-AGG-----AGGG 5'

 -21.50 2 RIC-seq
chrX:139865971:139865997:[+] chr1:55318006:55318025:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            ||||:|||||| ||| |:||


target  3': UAGAGGGUCUUG-AGG-----AGGGC 5'

 -21.30 13 RIC-seq
chrX:139865989:139866007:[+] chr1:55318006:55318025:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGUAA-CCUCCC 3'


            ||||:|||| ||||||


target  3': UAGAGGGUCUUGAGGAGGGC 5'

 -24.40 3 RIC-seq
chrX:139866328:139866358:[+] chr1:55331036:55331061:[-] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGGAAAUCCGUGUCUUCC 3'


            ||||||:|:|| || |||||||


target  3':GAGGUCCGGGAGAGCCAA-----ACAGAAGU 5'

 -29.20 1 RIC-seq
chrX:139866332:139866345:[+] chr1:55318040:55318052:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAA 3'


            ||: ||| |


target  3':GCCGUAU-GUCGUA 5'

 -5.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:55318035:55318052:[-] target 4367 chr1:55318045-55318046 T>G Desmosterolosis ClinVar
chr1:55318040:55318052:[-] target 4367 chr1:55318045-55318046 T>G Desmosterolosis ClinVar
chr1:55331036:55331061:[-] target 1027890 chr1:55331038-55331039 C>A Desmosterolosis ClinVar