Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865692:139865718:[+] chr2:73651974:73652000:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCACCAAAUCCAAGUCU-UCCAG 3'


            ||||||| ||||| || :|||


target  3':UUAGAAGGACAC--AGGUUAUGACGGGUA 5'

 -19.20 22 RIC-seq
chrX:139865731:139865766:[+] chr2:73716882:73716911:[+] nonBSJ supported CDS

circRNA 5':UUCCAGAAAAAUCUAGAUCUUCCAGU-CAAUCAGUGU 3'


            ||||| :|||||| ||: ||| ||||


target  3':CAGGUC-------GUCUAGACUUUCGUGUUCC-CACAG 5'

 -17.00 2 RIC-seq
chrX:139865917:139865941:[+] chr2:73613224:73613242:[+] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGCCAAUAUAUGUCUUC 3'


            |:|| |||||| |:|||


target  3':GCGGAC-GUCGGUC-----CGGAAC 5'

 -14.90 1 RIC-seq
chrX:139865921:139865961:[+] chr2:73613220:73613256:[+] nonBSJ supported CDS

circRNA 5':UUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUU--CCA 3'


            ||| ||| ||: |||| || ||| |:||| ||


target  3':UAGGACGGCCCC--ACGC--GGACGUC--GGUCCGGAACCGGA 5'

 -23.20 4 RIC-seq
chrX:139865921:139865979:[+] chr2:73613218:73613256:[+] nonBSJ supported CDS

circRNA 5':UUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            ||| ||| ||: |||| || ||| |:|| || |:|||


target  3':UAGGACGGCCCC--ACGC--GGACGUC--GGUCCGGA-------------ACCGGAGG 5'

 -26.30 15 RIC-seq
chrX:139866190:139866220:[+] chr2:73679200:73679221:[+] nonBSJ supported CDS

circRNA 5':AGCUUCCAAAAAAUCC--GGGUCUUCCAGGAAA 3'


            |||: || |||| |||||


target  3':ACGAGAG------AGACACCCA-----UCCUUA 5'

 -11.20 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:73613218:73613256:[+] target 2873688 chr2:73613232-73613233 G>A Alstrom_syndrome ClinVar
chr2:73613218:73613256:[+] target 2966683 chr2:73613233-73613234 G>A Alstrom_syndrome ClinVar
chr2:73613220:73613256:[+] target 2873688 chr2:73613232-73613233 G>A Alstrom_syndrome ClinVar
chr2:73613220:73613256:[+] target 2966683 chr2:73613233-73613234 G>A Alstrom_syndrome ClinVar
chr2:73613224:73613242:[+] target 2873688 chr2:73613232-73613233 G>A Alstrom_syndrome ClinVar
chr2:73613224:73613242:[+] target 2966683 chr2:73613233-73613234 G>A Alstrom_syndrome ClinVar
chr2:73651974:73652000:[+] target 551310 chr2:73651983-73651984 A>AT Alstrom_syndrome ClinVar
chr2:73651974:73652000:[+] target 555656 chr2:73651985-73651986 TGGACACA>T Retinal_dystrophy|not_provided|Alstrom_syndrome|ALMS1-related_disorder|Cardiovascular_phenotype ClinVar
chr2:73651974:73652000:[+] target 2127483 chr2:73651992-73651993 AG>A Alstrom_syndrome ClinVar
chr2:73679200:73679221:[+] target 1726779 chr2:73679207-73679208 C>A Alstrom_syndrome ClinVar
chr2:73679200:73679221:[+] target 1724298 chr2:73679214-73679215 A>T Alstrom_syndrome ClinVar
chr2:73716882:73716911:[+] target 1726683 chr2:73716892-73716893 T>A Alstrom_syndrome ClinVar
chr2:73716882:73716911:[+] target 555240 chr2:73716910-73716911 AC>A Alstrom_syndrome ClinVar