Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865356:139865406:[+] chr2:175982985:175983020:[-] nonBSJ supported CDS

circRNA 5':UGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCUUC 3'


            |||||| ||||| ::|: ||| || |||| |||:


target  3':UUACAGU---AGAAGAC--------UUCGAAAGAA--CUUAAGUA-AGAG 5'

 -14.20 10 RIC-seq
chrX:139865356:139865406:[+] chr2:175982985:175983021:[-] nonBSJ supported CDS

circRNA 5':UGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCUUC 3'


            |||||| ||||| ::|: ||| || |||| |||:


target  3':UUACAGU---AGAAGAC--------UUCGAAAGAA--CUUAAGUA-AGAGU 5'

 -14.60 11 RIC-seq
chrX:139866295:139866378:[+] chr2:175983007:175983063:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCC--CUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAU-CCGUGUCUUCCAGCAAAUCCACGUCUUC-CAA 3'


            ||| ||| ||||||| ||| ||: || |:||||:|||| ||||| ||


target  3': AACUUAAGUAAGAGUUUA------------------------------CCUGAGCGGUUGAGUAAUUUGUUUGGGUGAAGAAGUGUC 5'

 -32.90 12 RIC-seq
chrX:139866296:139866378:[+] chr2:175983008:175983063:[-] nonBSJ supported CDS

circRNA 5':UUGUCUUCC--CUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAU-CCGUGUCUUCCAGCAAAUCCACGUCUUC-CAA 3'


            || ||| ||||||| ||| ||: || |:||||:|||| ||||| ||


target  3': ACUUAAGUAAGAGUUUA------------------------------CCUGAGCGGUUGAGUAAUUUGUUUGGGUGAAGAAGUGUC 5'

 -32.10 1 RIC-seq
chrX:139866330:139866378:[+] chr2:175983013:175983063:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCA-GGAAAU-CCGUGUCUUCCAGCAAAUCCACGUCUUC-CAA 3'


            || |||: ||| ||: || |:||||:|||| ||||| ||


target  3':AGUA-AGAGUUUACCUGAGCGGUUGAGUAAUUUGUUUGGGUGAAGAAGUGUC 5'

 -30.70 12 RIC-seq
chrX:139866334:139866378:[+] chr2:175983016:175983063:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCA-GGAAAU-CCGUGUCUUCCAGCAAAUCCACGUCUUC-CAA 3'


            |||: ||| ||: || |:||||:|||| ||||| ||


target  3':AAGAGUUUACCUGAGCGGUUGAGUAAUUUGUUUGGGUGAAGAAGUGUC 5'

 -30.00 1 RIC-seq
chrX:139866350:139866378:[+] chr2:175983029:175983063:[-] nonBSJ supported CDS

circRNA 5':GUGUCUUC-CA----GCAAAUCCACGUCUUC-CAA 3'


            ||:| | || :||||:|||| ||||| ||


target  3':AGCGGUUGAGUAAUUUGUUUGGGUGAAGAAGUGUC 5'

 -24.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866295:139866378:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866296:139866378:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC