Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865712:139865725:[+] chr2:42580386:42580400:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGUA-AAUCU 3'


            |:||||:| ||||


target  3':AAGGGUCGUAUUAGU 5'

 -12.90 1 RIC-seq
chrX:139865712:139865757:[+] chr2:42580386:42580425:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGUA-AAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUC 3'


            |:||||:| |||| || || ||| || ||||


target  3':AAGGGUCGUAUUAGUAUGUGACAC-CU---UAGC-CUCCA--GUCAA 5'

 -13.30 1 RIC-seq
chrX:139865726:139865758:[+] chr2:42580381:42580415:[-] nonBSJ supported CDS

circRNA 5':AGUUC-UUCCAGAAAAAUC-UAGAUCUUCCAGUCA 3'


            ||| |:|||| |||| || |: |:||


target  3':ACAAAAAGGGUCGUAUUAGUAUGUGACACCUUAGC 5'

 -13.30 30 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:42580381:42580415:[-] target - chr2:42580395-42580396 T>A LICA-CN ICGC
chr2:42580386:42580400:[-] target - chr2:42580395-42580396 T>A LICA-CN ICGC
chr2:42580386:42580425:[-] target - chr2:42580395-42580396 T>A LICA-CN ICGC