5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866204:139866254:[+] | chr2:39237758:39237823:[-] | nonBSJ supported | CDS |
circRNA 5':CCGGGUCUUC--CAGGAAA---------------UCCGUGUCUUCCAGCAAGUCCACGU-CUUCCAACA 3' ||::|| |||:| || ||||||| ||||||: |||||||| target 3': GCUUAGUAAAAGUCUUCUAAUCCUCUCAAUUAAAGAAACAGAAGAAAA--CAGGUGUGUGAAGGUUGA 5' |
-37.10 | 9 | RIC-seq |
| chrX:139866204:139866254:[+] | chr2:39237768:39237823:[-] | nonBSJ supported | CDS |
circRNA 5':CCGGGUCUUCCAGGAAA-------UCCGUGUCUUCCAGCAAGUCCACGU-CUUCCAACA 3' |:|: |||| || ||||||| ||||||: |||||||| target 3':AGUCUUCUAA-UCCUCUCAAUUAAAGAAACAGAAGAAAA--CAGGUGUGUGAAGGUUGA 5' |
-35.40 | 4 | RIC-seq |
| chrX:139866214:139866254:[+] | chr2:39237777:39237823:[-] | nonBSJ supported | CDS |
circRNA 5':CAGGAAA-------UCCGUGUCUUCCAGCAAGUCCACGU-CUUCCAACA 3' |||| || ||||||| ||||||: |||||||| target 3':AUCCUCUCAAUUAAAGAAACAGAAGAAAA--CAGGUGUGUGAAGGUUGA 5' |
-33.20 | 1 | RIC-seq |
| chrX:139866214:139866254:[+] | chr2:39237778:39237823:[-] | nonBSJ supported | CDS |
circRNA 5':CAGGAAA-------UCCGUGUCUUCCAGCAAGUCCACGU-CUUCCAACA 3' |||| || ||||||| ||||||: |||||||| target 3': UCCUCUCAAUUAAAGAAACAGAAGAAAA--CAGGUGUGUGAAGGUUGA 5' |
-32.70 | 11 | RIC-seq |
| chrX:139866215:139866254:[+] | chr2:39237777:39237823:[-] | nonBSJ supported | CDS |
circRNA 5': AGGAAA-------UCCGUGUCUUCCAGCAAGUCCACGU-CUUCCAACA 3' |||| || ||||||| ||||||: |||||||| target 3':AUCCUCUCAAUUAAAGAAACAGAAGAAAA--CAGGUGUGUGAAGGUUGA 5' |
-33.10 | 1 | RIC-seq |