Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865763:139865795:[+] chr2:135887624:135887655:[+] nonBSJ supported CDS

circRNA 5':GUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGU 3'


            ||:|||| |||| |||:|| ||||:


target  3':AACGGAAGAAGGAG-UUUACGUCUAGCAGGUUC 5'

 -23.30 14 RIC-seq
chrX:139865777:139865795:[+] chr2:135887624:135887641:[+] nonBSJ supported CDS

circRNA 5':GAAAUCCAGGUCUUCCAGU 3'


            |||| |||:|| ||||:


target  3': UUUACGUCUAGCAGGUUC 5'

 -14.50 10 RIC-seq
chrX:139865782:139865795:[+] chr2:135887624:135887637:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGU 3'


            |||:|| ||||:


target  3':CGUCUAGCAGGUUC 5'

 -13.60 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:135887624:135887637:[+] target 545410 chr2:135887630-135887631 C>T Warburg_micro_syndrome_1|not_provided|Martsolf_syndrome_2 ClinVar
chr2:135887624:135887641:[+] target 545410 chr2:135887630-135887631 C>T Warburg_micro_syndrome_1|not_provided|Martsolf_syndrome_2 ClinVar
chr2:135887624:135887655:[+] target 545410 chr2:135887630-135887631 C>T Warburg_micro_syndrome_1|not_provided|Martsolf_syndrome_2 ClinVar
chr2:135887624:135887637:[+] target - chr2:135887631-135887632 G>A BTCA-JP|LINC-JP ICGC
chr2:135887624:135887641:[+] target - chr2:135887631-135887632 G>A BTCA-JP|LINC-JP ICGC
chr2:135887624:135887655:[+] target - chr2:135887631-135887632 G>A BTCA-JP|LINC-JP ICGC