Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865780:139865811:[+] chr2:135893282:135893315:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAA-UCAGUG-UCUUCCA 3'


            |||||| |:|||: || |||:||


target  3':GAGGUCCUUAGGGUUCUAAAAGGAUGGAGAGGGA 5'

 -25.50 1 RIC-seq
chrX:139865786:139865843:[+] chr2:135893268:135893328:[+] nonBSJ supported CDS

circRNA 5':GUCUUC-CAGUCAA-UCAGUGUCUUCCAGAAAGAAA-UCCAGG-UCUUCCAG-UCA--GUCAGUG 3'


            ||||| | |||| :||| | |:||| ||| ||| |||:|| || :|| ||


target  3':AAGAAGCGACAGUGAGGUC-CUUAGGGU---UCUAAAAGGAUGGAGAGGGAAAAGGAAUAGACAA 5'

 -30.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:135893268:135893328:[+] target 7060 chr2:135893313-135893314 G>A Warburg_micro_syndrome_1 ClinVar
chr2:135893282:135893315:[+] target 7060 chr2:135893313-135893314 G>A Warburg_micro_syndrome_1 ClinVar