Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865456:139865515:[+] chr2:61575319:61575382:[-] nonBSJ supported CDS

circRNA 5':AUCUUCCAGACAAUCCAUGUCUUCCGGACAAUCCAUG--UCU--UCC-AAGAA--GCUCCAAGUCUU 3'


            ||::|||| ||| |||:|| | ||| || ||| ||| |||| | ||| ||


target  3':CAGGGGGUCCGUU---UACGGACGAACUGAGAGAUUGAAAGAUAAGGCUUCUAGACAUGGUGUUGAC 5'

 -32.10 1 RIC-seq
chrX:139865463:139865507:[+] chr2:61575341:61575385:[-] nonBSJ supported CDS

circRNA 5':AGACAAUCCAUG--UCU--UCCGGACAAUCCAUGUCUUCCAAGAA-GCUC 3'


            ||| || ||| ||||:| ||| ||| ||| |||


target  3':ACUGAGAGAUUGAAAGAUAAGGCUUC-UAG--ACAU--GGUGUUGACGAA 5'

 -17.70 1 RIC-seq
chrX:139865502:139865535:[+] chr2:61515841:61515865:[-] nonBSJ supported CDS

circRNA 5':AAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCA 3'


            ||| :|| ||||: ||:|||||


target  3':AUCGUAC--UAGU-GGUCG------UCGGAAGGA 5'

 -21.50 1 RIC-seq
chrX:139866099:139866160:[+] chr2:61456063:61456127:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAUC---CACAUCUUCCAAUGGCCUCCAG-GUCUUCCA--GAC-UAUCCAUGUCUUCC 3'


            |||: ||:| ||||| ||:|:|| ||| :||||| || |||||||:|| ||


target  3':AAGAGUGUUUCGCUCACUGUGUAC----UUGCUGGUGGUUAUAGAAGAUGACUCCAUAGGUAUAGUAGA 5'

 -38.50 1 RIC-seq
chrX:139866118:139866139:[+] chr2:61505545:61505567:[-] nonBSJ supported CDS

circRNA 5': UCUU-CCAAUGGCCUCCAGGUCU 3'


            |||| |||| ||| || |:|||


target  3':CAGAACGGUU-CCGUAGAUUCAGC 5'

 -19.90 1 RIC-seq
chrX:139866723:139866745:[+] chr2:61415341:61415373:[-] nonBSJ supported CDS

circRNA 5': ACUACCCAGUCUU---------CCAUCAACUG 3'


            |||| ||||:| ||| ||||||


target  3':CUGAUUUCUCAGGAGACCUUACCGGU-GUUGACU 5'

 -15.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:61456063:61456127:[-] target - chr2:61456075-61456076 G>T LICA-CN ICGC
chr2:61575319:61575382:[-] target - chr2:61575336-61575337 C>T LINC-JP ICGC