Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865856:139865939:[+]	chr2:84945305:84945371:[+]	nonBSJ supported	CDS	circRNA 5':AUCUACG-UCUUCCACCAAAUCCAGGUC-UUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCU 3' \|\|\| \|\|\|\|\|\|\| \|:\| \|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|:\| \|:\|\| \|\|\| \|\|:\|\|\| target 3':AAGAAACAAGAAGGU----UGGACCCAAAAAGUUCAGCGUGGUGUAGUGA-----UUUUGGUUUCAA---GUC-------UAUAGA 5'	-35.90	1	RIC-seq
chrX:139865912:139865955:[+]	chr2:84945381:84945439:[+]	nonBSJ supported	CDS	circRNA 5':AUC-CAGG------UCUUC---------CAGCCAAUAUAUGUCUUCCUGAAGAUCC--ACGU 3' \|\| \|\|\|\| \|\|\|\|\| \|\|:\| \|:\|\| \|\| \|\|\|\|\| \|\|\| target 3': AGAGUCCUAAAAGAGAAGCUAUCAAAAGUUGACCAAAAAUAGUC--ACAACUAGGAGUGCU 5'	-18.30	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr2:84945381:84945439:[+]	target	-	chr2:84945398-84945399	G>T	LICA-CN	ICGC
chrX:139865856:139865939:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC