Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866729:139866747:[+] chr2:61021285:61021300:[+] nonBSJ supported CDS

circRNA 5':CAGUCUUCCAUCAACUGGC 3'


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target  3':CUCAG--GGUAGAU-ACCU 5'

 -11.40 1 RIC-seq
chrX:139866753:139866788:[+] chr2:61021289:61021323:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAACGUCUCCAGUGUGCUGAUCUU 3'


            || |:||||| |||| ||| | || |: ||||


target  3':AAGAUGCAGAAAGUUGGAGAAUCCUCA-GGGUAGAU 5'

 -24.30 1 RIC-seq
chrX:139866753:139866792:[+] chr2:61021286:61021323:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCUGA 3'


            || |:||||| |||| ||| | || |: |||| ||


target  3':AAGAUGCAGAAAGUUGGAGAAUCCUCA-GGGUAGAU-ACC 5'

 -24.90 26 RIC-seq
chrX:139866760:139866792:[+] chr2:61021286:61021317:[+] nonBSJ supported CDS

circRNA 5': UCUUCCAACGUCUCCAGUGUGCUGAUCUUCUGA 3'


            |||| |||| ||| | || |: |||| ||


target  3':CAGAAAGUUGGAGAAUCCUCA-GGGUAGAU-ACC 5'

 -18.40 1 RIC-seq
chrX:139866778:139866801:[+] chr2:61021299:61021321:[+] nonBSJ supported CDS

circRNA 5':GUGCUGAUCUUCUGACAUUC--AGGU 3'


            |:| | |||| ::|| :|| |||


target  3':GAUG-C-AGAAAGUUG-GAGAAUCCU 5'

 -7.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866778:139866801:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC