Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865560:139865590:[+] chr2:55549685:55549714:[-] nonBSJ supported CDS

circRNA 5': CUGGUCUUCCACCAAAUCCAGAUCUUC-C-AGG 3'


            || ||||| || |||| ||| | ||


target  3':AGA-CAGAAAUUGAAA---GUCUUCAAGAGAUCA 5'

 -10.60 1 RIC-seq
chrX:139865610:139865642:[+] chr2:55549683:55549711:[-] nonBSJ supported CDS

circRNA 5':AAAUCCAUGUCUUCCAAUAAUUUCA-AGG-UCUUC 3'


            |||| |||||| ||||| |:| |||:


target  3': UUAG--ACAGAAAUUG---AAAGUCUUCAAGAGA 5'

 -12.20 20 RIC-seq
chrX:139865878:139865896:[+] chr2:55536140:55536155:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUCCA 3'


            ||| |||||| ||


target  3':CUCAUUAGGUCAAC--GG 5'

 -12.20 1 RIC-seq
chrX:139865878:139865896:[+] chr2:55536140:55536156:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUCCA 3'


            ||| |||||| ||


target  3':CUCAUUAGGUCAAC--GGA 5'

 -12.00 1 RIC-seq
chrX:139865989:139866004:[+] chr2:55536141:55536156:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGUAACCU 3'


            || |||||| |||


target  3':UCAUUAGGUCAACGGA 5'

 -13.00 1 RIC-seq
chrX:139865989:139866005:[+] chr2:55536141:55536156:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGUAACCUC 3'


            || |||||| |||


target  3':UCAUUAGGUCAACGGA 5'

 -13.10 8 RIC-seq
chrX:139866205:139866228:[+] chr2:55523437:55523469:[-] nonBSJ supported CDS

circRNA 5':CGGGU----------CUUCCAGGAAAUCCGUGUC 3'


            |:|| |||||||| ||: ||


target  3':UCUCAUUGUUGAAGUGAAGGUCCCCUUGGU-CAA 5'

 -17.60 8 RIC-seq
chrX:139866734:139866751:[+] chr2:55576708:55576724:[-] nonBSJ supported CDS

circRNA 5':UUCCAUCAACUGGCUCAA 3'


            |||| ||||| |||||


target  3':UAGGUUGUUGA-CGAGUC 5'

 -19.30 6 RIC-seq