Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865767:139865775:[+] chr2:55209776:55209784:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGAA 3'


            |||||||


target  3':UAAGGUCUA 5'

 -9.70 1 RIC-seq
chrX:139865781:139865811:[+] chr2:55253531:55253568:[-] nonBSJ supported CDS

circRNA 5':UCCAGGU-CUUC---CAG-UCAA--UCA-GUGUCUUCCA 3'


            |||| |||| ||: ||| ||| :|| |||||


target  3':UGGUCAUUGAAGUAAGUUAAGUGAAAGUGUAC-GAAGGA 5'

 -20.90 4 RIC-seq
chrX:139865781:139865822:[+] chr2:55253531:55253578:[-] nonBSJ supported CDS

circRNA 5':UCCAGGU-CUUC---CAG-UCAA--UCA-GUGUCUUCCAGAAAGAAAUCC 3'


            |||| |||| ||: ||| ||| :|| ||||| |||||


target  3':UGGUCAUUGAAGUAAGUUAAGUGAAAGUGUAC-GAAGGACAUGAUUUAG 5'

 -22.90 20 RIC-seq
chrX:139865785:139865797:[+] chr2:55214636:55214647:[-] nonBSJ supported CDS

circRNA 5': GGUCUUCCAGUCA 3'


            ||:|||| :||


target  3':ACCGGAAG--UAGA 5'

 -12.30 1 RIC-seq
chrX:139865806:139865814:[+] chr2:55209776:55209784:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGAA 3'


            |||||||


target  3':UAAGGUCUA 5'

 -9.70 1 RIC-seq
chrX:139865815:139865836:[+] chr2:55214628:55214647:[-] nonBSJ supported CDS

circRNA 5':AGAAAUCCAGGUCUUCCAGUCA 3'


            ||| ||:|||| :||


target  3':ACUUACCCACCGGAAG--UAGA 5'

 -12.20 4 RIC-seq
chrX:139865923:139865952:[+] chr2:55253843:55253871:[-] nonBSJ supported CDS

circRNA 5':CCAGCCAAUAUAUGUCUUCCUGAA-GAUCCA 3'


            || |||||||: ||||||| |||||


target  3':UGUACACUAUAUACG--AGGACUUGCUAGGA 5'

 -25.20 1 RIC-seq
chrX:139865924:139865952:[+] chr2:55253840:55253871:[-] nonBSJ supported CDS

circRNA 5':CAGC-CA----AUAUAUGUCUUCCUGAA-GAUCCA 3'


            ||| || |||||||: ||||||| |||||


target  3': UCGUGUACACUAUAUACG--AGGACUUGCUAGGA 5'

 -27.10 19 RIC-seq
chrX:139865925:139865952:[+] chr2:55253841:55253871:[-] nonBSJ supported CDS

circRNA 5':AGC-CA----AUAUAUGUCUUCCUGAA-GAUCCA 3'


            || || |||||||: ||||||| |||||


target  3': CGUGUACACUAUAUACG--AGGACUUGCUAGGA 5'

 -25.40 2 RIC-seq
chrX:139865987:139866012:[+] chr2:55253584:55253622:[-] nonBSJ supported CDS

circRNA 5': CAUGUCUUCCAGUA-----------ACCUCC-CAGUCU 3'


            || |:|||| |:| || ||| |||||


target  3':AGUCCGGAAGUCCGUACAAACGGUGCUGAAGGAGUCAGU 5'

 -19.80 2 RIC-seq
chrX:139865989:139866034:[+] chr2:55253522:55253568:[-] nonBSJ supported CDS

circRNA 5':UGUCUU----CCAGUAACCUCC--CAGUCUUCCAGAAAAUCCACGU-CUUCCC 3'


            ||||| |||||||| || ||:| || |||:| |||||


target  3':UUAGAAACAUGGUCAUUGAAGUAAGUUAA---GUGAAA---GUGUACGAAGGA 5'

 -24.60 2 RIC-seq
chrX:139866204:139866236:[+] chr2:55252284:55252307:[-] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGGAAAUCCGUGUCUUC-CAGCA 3'


            |||: ||||| || ||| ||||


target  3':AGCCU------UCCUU----CAAAAAAGAGUCGA 5'

 -15.50 18 RIC-seq
chrX:139866204:139866260:[+] chr2:55253584:55253625:[-] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGCCA 3'


            |:||:||| |||| |:||| ||||| ||||| :||


target  3':AGUCCGGAA-GUCC-----GUACAAAC---------GGUGCUGAAGGAGUCAGUGGA 5'

 -38.00 18 RIC-seq
chrX:139866617:139866638:[+] chr2:55253531:55253554:[-] nonBSJ supported CDS

circRNA 5':UCCAGGU-CUUCCAGCAUCUC-CA 3'


            |||| |||| || || |


target  3':UGGUCAUUGAAGUAAGUUAAGUGA 5'

 -11.20 1 RIC-seq
chrX:139866617:139866651:[+] chr2:55253531:55253560:[-] nonBSJ supported CDS

circRNA 5':UCCAGGU-CUUCCAGCAUCUCCAGGGCUUCCAGCAU 3'


            |||| |||| || || :||| :||


target  3':UGGUCAUUGAAGUAAGUUAAG----UGAAAG-UGU 5'

 -13.40 15 RIC-seq
chrX:139866635:139866666:[+] chr2:55253531:55253559:[-] nonBSJ supported CDS

circRNA 5':UCCAG-GGCUUCCAGCAUCUGCUCGUCUUCCAA 3'


            |||| ::|||| || ||: ||| ||


target  3':UGGUCAUUGAAGUAAGUUA---AGU-GAAAGUG 5'

 -13.10 1 RIC-seq
chrX:139866645:139866668:[+] chr2:55252302:55252322:[-] nonBSJ supported CDS

circRNA 5':CCAGCAUCUGCUCGUCUUCCAACA 3'


            |||| ||| ||: | |||


target  3':AGUCGAAGAA-AGU-GUUC-UUGA 5'

 -10.00 13 RIC-seq
chrX:139866646:139866668:[+] chr2:55252302:55252322:[-] nonBSJ supported CDS

circRNA 5': CAGCAUCUGCUCGUCUUCCAACA 3'


            |||| ||| ||: | |||


target  3':AGUCGAAGAA-AGU-GUUC-UUGA 5'

 -9.60 4 RIC-seq
chrX:139866692:139866715:[+] chr2:55253528:55253547:[-] nonBSJ supported CDS

circRNA 5':GUGUCUUCCAGCAUCUUCAUGUCU 3'


            ||| |||| |||||| ||


target  3': ACAU--GGUCAUUGAAGUA-AGU 5'

 -12.30 17 RIC-seq
chrX:139866741:139866750:[+] chr2:55252231:55252241:[-] nonBSJ supported CDS

circRNA 5':AACU-GGCUCA 3'


            ||| :||||


target  3':AUGAGUCGAGA 5'

 -9.40 11 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:55214628:55214647:[-] target - chr2:55214634-55214635 G>T LICA-CN ICGC
chr2:55253584:55253622:[-] target - chr2:55253609-55253610 G>T LICA-CN ICGC
chr2:55253584:55253625:[-] target - chr2:55253609-55253610 G>T LICA-CN ICGC