5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865335:139865373:[+] | chr2:54877064:54877113:[+] | nonBSJ supported | CDS |
circRNA 5':UCCAGGGU------UUCCGAUG------GCAC-CUGUGUCAAGGUCUUCCAA 3' || ||:| :|| :||| ||| || ||| |||||| |||| target 3':CGGACCUACAGUACGAGUUUACAUCACACGUAAGAGACA-UUCCAG-AGGUG 5' |
-25.90 | 12 | RIC-seq |
| chrX:139865636:139865647:[+] | chr2:54873338:54873350:[+] | nonBSJ supported | CDS |
circRNA 5': GGUCUUCCAUCA 3' || ||| || target 3':ACCUAAAGAAAGA 5' |
-5.20 | 1 | RIC-seq |
| chrX:139865687:139865698:[+] | chr2:54873342:54873352:[+] | nonBSJ supported | CDS |
circRNA 5':UCUGUGUCUUCC 3' ||| | ||| target 3':GGAC-CUAAAGA 5' |
-4.40 | 1 | RIC-seq |
| chrX:139865759:139865789:[+] | chr2:54849496:54849517:[+] | nonBSJ supported | CDS |
circRNA 5':AUCAGUGUCUUCCAGAAAGAAAUCCAGGUCU 3' |||:| : ||||||| ||||| target 3':AAGUUAGGUAAGGUCU---------UCCAGU 5' |
-20.10 | 1 | RIC-seq |
| chrX:139865784:139865828:[+] | chr2:54849496:54849524:[+] | nonBSJ supported | CDS |
circRNA 5':AGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCU 3' ||| |||||| ||||||| ||||| target 3':ACCAAACA---AGUUAGGU----AAGGUCU---------UCCAGU 5' |
-20.80 | 1 | RIC-seq |
| chrX:139865801:139865862:[+] | chr2:54872461:54872534:[+] | nonBSJ supported | CDS |
circRNA 5':AGUGUCUUCCAGA-----AAGAAAUCCAGGUCUUCCA--------GUCAGU-CAGUGUCUUCCAGAAAAAUCUACG 3' ||| ||||| ||| ||||| :|||| ||| |: | ||| ||||| target 3':AUAC-GAAGGAGAGCAAGUUCCCGAGGUCGUUGAGGUACUUGAACCAGACGUGCCACUCCGCGAACGAC-AGAUGG 5' |
-28.70 | 1 | RIC-seq |
| chrX:139865801:139865864:[+] | chr2:54872458:54872532:[+] | nonBSJ supported | CDS |
circRNA 5':AGUGUCUUC-CAGA-AAGAAAUCCAGGUCUUCCA--------GUCAGU-CAGUGUCUUCCAGAAAAAUCUACGUC 3' |: ||:|| | ||| ||||| :|||| ||| |: | ||| ||||| || target 3':ACGAAGGAGAGCAAGUUCCCGAGGUCGUUGAGGUACUUGAACCAGACGUGCCACUCCGCGAACGAC-AGAUGGAGC 5' |
-30.90 | 2 | RIC-seq |
| chrX:139865801:139865864:[+] | chr2:54872458:54872534:[+] | nonBSJ supported | CDS |
circRNA 5':AGUGUCUUCCAGA-----AAGAAAUCCAGGUCUUCCA--------GUCAGU-CAGUGUCUUCCAGAAAAAUCUACGUC 3' ||| ||||| ||| ||||| :|||| ||| |: | ||| ||||| || target 3':AUAC-GAAGGAGAGCAAGUUCCCGAGGUCGUUGAGGUACUUGAACCAGACGUGCCACUCCGCGAACGAC-AGAUGGAGC 5' |
-31.20 | 12 | RIC-seq |
| chrX:139865801:139865882:[+] | chr2:54872474:54872534:[+] | nonBSJ supported | CDS |
circRNA 5':AGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCA-GAAAAAUCUACGUCUUCCACCAAAUCCAGGUC 3' ||| ||||| | || ||| | ||||| ||: :|||| ||| || |||| ||| |||: target 3':AUAC-GAAGGAGAG-CA--AGUUCCCG-AGGUC-GUU--------GAGGUACUU----GAACCAGAC-GUGCCAC---UCCGC 5' |
-30.80 | 16 | RIC-seq |
| chrX:139865823:139865854:[+] | chr2:54849500:54849524:[+] | nonBSJ supported | CDS |
circRNA 5':AGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAA 3' ||| |||:|| |||||||| target 3':ACCAAACA---AGUUAGGU----AAGGUCUUC 5' |
-16.80 | 2 | RIC-seq |
| chrX:139865827:139865849:[+] | chr2:54848628:54848648:[+] | nonBSJ supported | CDS |
circRNA 5':CUUCCAGUCAGUCAGUGUCUUCC 3' |||||:| || :|||| target 3':AAAGGUUAAGCAAAA--GGAAGU 5' |
-12.30 | 1 | RIC-seq |
| chrX:139865867:139865893:[+] | chr2:54848627:54848653:[+] | nonBSJ supported | CDS |
circRNA 5':CCACCAAAUCCAGGUC---UUCCAGUCAAU 3' |||| ||||: || |||| |||| target 3':AGUGGAA-AGGUUAAGCAAAAGGA-AGUU 5' |
-16.00 | 18 | RIC-seq |
| chrX:139865874:139865886:[+] | chr2:54873342:54873354:[+] | nonBSJ supported | CDS |
circRNA 5':AUCCAGGUCUUCC 3' ||| || ||| target 3':GGGGACCUAAAGA 5' |
-6.50 | 4 | RIC-seq |
| chrX:139865875:139865886:[+] | chr2:54873342:54873353:[+] | nonBSJ supported | CDS |
circRNA 5':UCCAGGUCUUCC 3' || || ||| target 3':GGGACCUAAAGA 5' |
-6.40 | 2 | RIC-seq |
| chrX:139865897:139865916:[+] | chr2:54848631:54848653:[+] | nonBSJ supported | CDS |
circRNA 5': CAUC-UUCCGGAAAAAA-UCCA 3' ||:| ||||:: ||| target 3':AGUGGAAAGGUUAAGCAAAAGGA 5' |
-11.20 | 28 | RIC-seq |
| chrX:139866052:139866083:[+] | chr2:54853217:54853246:[+] | nonBSJ supported | CDS |
circRNA 5':GGAUAAUUUGGGUCUUCCUGAAAAUCUA-CGUC 3' ||:| ||| :|||||| ||: target 3':ACUGU--AACA-GGAAGGAGCGACACUACGCGA 5' |
-13.30 | 20 | RIC-seq |
| chrX:139866184:139866206:[+] | chr2:54856423:54856451:[+] | nonBSJ supported | CDS |
circRNA 5':AUCUAUAGCUUCC------AAAAAAUCCG 3' ||:|: |||:|| ||| |||| target 3':CGGGUGACGAGGGCCUACAUUUACUAGGA 5' |
-14.20 | 1 | RIC-seq |
| chrX:139866184:139866218:[+] | chr2:54856414:54856451:[+] | nonBSJ supported | CDS |
circRNA 5':AUCUAUAGCUUCCAAAAAAUCCGGGUCUUC-CA-GGA 3' ||:|: |||:|| |:||:|| || ||| target 3':CGGGUGACGAGGGCCUACAUUUACUAGGAGAGUGCCUA 5' |
-24.70 | 1 | RIC-seq |
| chrX:139866184:139866219:[+] | chr2:54856414:54856451:[+] | nonBSJ supported | CDS |
circRNA 5':AUCUAUAGCUUCCAAAAAAUCCGGGUCUUC-CA-GGAA 3' ||:|: |||:|| |:||:|| || ||| target 3':CGGGUGACGAGGGCCUACAUUUACUAGGAGAGUGCCUA 5' |
-25.20 | 4 | RIC-seq |
| chrX:139866276:139866308:[+] | chr2:54883103:54883135:[+] | nonBSJ supported | CDS |
circRNA 5':CCAUGUCUU--CCAGAAA-AUCCUUGUCUUCCCUCA 3' || ||||| ||| ||| |||||||| | target 3':AGU-CAGAAUUGGUAAGGGUAGC--CAGAAGGGUGA 5' |
-24.50 | 17 | RIC-seq |
| chrX:139866300:139866335:[+] | chr2:54871487:54871514:[+] | nonBSJ supported | CDS |
circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUC-CAGGU 3' |||| ||| |||:|||||||| || |||| target 3':AGAGGAAGU---GGUGUCGAAGGC-----AGAGUCC 5' |
-32.20 | 2 | RIC-seq |
| chrX:139866300:139866336:[+] | chr2:54871486:54871514:[+] | nonBSJ supported | CDS |
circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUC-CAGGUC 3' |||| ||| |||:|||||||| || ||||: target 3':AGAGGAAGU---GGUGUCGAAGGC-----AGAGUCCG 5' |
-33.70 | 9 | RIC-seq |
| chrX:139866300:139866348:[+] | chr2:54871474:54871514:[+] | nonBSJ supported | CDS |
circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUC-CAGGUCUUCCAGGAAAUC 3' |||| ||| |||:|||||||| || |||| ||| ||||| target 3':AGAGGAAGU---GGUGUCGAAGGC-----AGAGUCC-GAAAAGACUUUAC 5' |
-37.40 | 2 | RIC-seq |
| chrX:139866300:139866352:[+] | chr2:54871471:54871514:[+] | nonBSJ supported | CDS |
circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUC-CAGGUCUUCCAGGAAAUCCGUG 3' |||| ||| |||:|||||||| || |||| ||| ||||| |: target 3':AGAGGAAGU---GGUGUCGAAGGC-----AGAGUCC-GAAAAGACUUUACUCG 5' |
-37.90 | 13 | RIC-seq |
| chrX:139866615:139866639:[+] | chr2:54883116:54883136:[+] | nonBSJ supported | CDS |
circRNA 5':UCUCCAGGUCUUCCAGCAUCUCCAG 3' ||| :||||| | ||| :||| target 3': GAG--UCAGAAU-UGGUAAGGGUA 5' |
-13.10 | 1 | RIC-seq |
| chrX:139866615:139866639:[+] | chr2:54883117:54883136:[+] | nonBSJ supported | CDS |
circRNA 5':UCUCCAGGUCUUCCAGCAUCUCCAG 3' ||| :||||| | ||| :||| target 3': GAG--UCAGAAU-UGGUAAGGGU 5' |
-13.10 | 1 | RIC-seq |
| chrX:139866654:139866692:[+] | chr2:54872550:54872588:[+] | nonBSJ supported | CDS |
circRNA 5':GCUCGUCUUCCAACAUCUCCACGUCUUCCAGC-AUCUCUG 3' ||||||:||| |||||:| |||||| target 3':AGAGCAGGAGG-UGUAGGGACAACUUGACUACCUAGAGAA 5' |
-32.60 | 12 | RIC-seq |
| chrX:139866755:139866789:[+] | chr2:54877049:54877084:[+] | nonBSJ supported | CDS |
circRNA 5':CCAUGUCUUCCAAC-GUCUCCAGUGUG--CUGAUCUUC 3' ||| |||: ||||||| |||| |||||||: target 3': GUA-AGAGACAUUCCAGAGGUGACACAAGACUAGAGA 5' |
-30.90 | 11 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr2:54848627:54848653:[+] | target | 2444107 | chr2:54848638-54848639 | C>T | Developmental_delay,_impaired_speech,_and_behavioral_abnormalities | ClinVar |
| chr2:54848628:54848648:[+] | target | 2444107 | chr2:54848638-54848639 | C>T | Developmental_delay,_impaired_speech,_and_behavioral_abnormalities | ClinVar |
| chr2:54848631:54848653:[+] | target | 2444107 | chr2:54848638-54848639 | C>T | Developmental_delay,_impaired_speech,_and_behavioral_abnormalities | ClinVar |
| chrX:139865897:139865916:[+] | circRNA | - | chrX:139865903-139865904 | C>T | LINC-JP | ICGC |
| chrX:139866300:139866335:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |
| chrX:139866300:139866336:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |
| chrX:139866300:139866348:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |
| chrX:139866300:139866352:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |