Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865823:139865850:[+] chr2:54896677:54896701:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGUCAGUC-AGUGUC-UUCCA 3'


            ||: ||||:| ||| || ||||


target  3': CCG---GGUCGGAGACCUCA-AGUAAGGA 5'

 -16.20 4 RIC-seq
chrX:139865875:139865929:[+] chr2:54896692:54896731:[+] nonBSJ supported 3UTR

circRNA 5':UCCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCA 3'


            |||||:|| ||: |||| ||:|| ||||: ||||||


target  3':UGGUCCGGAC--UCGCU--GGUG--GAGGGACAA------GUCCG---GGUCGGA 5'

 -41.20 4 RIC-seq
chrX:139865913:139865929:[+] chr2:54896692:54896731:[+] nonBSJ supported 3UTR

circRNA 5':UCCAGGUCU-----------------------UCCAGCCA 3'


            |||||:|| :||||||


target  3':UGGUCCGGACUCGCUGGUGGAGGGACAAGUCCGGGUCGGA 5'

 -23.90 1 RIC-seq
chrX:139865943:139865979:[+] chr2:54886322:54886353:[+] nonBSJ supported CDS

circRNA 5':UGAAGAU--CCACGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            |||| || | |||||| ||| ||||||


target  3':UCUUCCGCCGGCGGAGAAGGAG----AGG---AGAAGGA 5'

 -25.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:54886322:54886353:[+] target - chr2:54886347-54886348 G>A LICA-CN ICGC
chrX:139865875:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC