Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865432:139865446:[+] chr19:1456115:1456128:[+] nonBSJ supported CDS

circRNA 5':AUCCUGAGCUUCCAG 3'


            ||||| ||:||||


target  3':CAGGACGCGGAGGU 5'

 -20.20 1 RIC-seq
chrX:139865432:139865447:[+] chr19:1456113:1456128:[+] nonBSJ supported CDS

circRNA 5':AUCCUGAGCUUCCAGA 3'


            ||||| ||:|||||


target  3':CAGGACGCGGAGGUCG 5'

 -23.30 24 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:1456113:1456128:[+] target - chr19:1456119-1456120 G>T LICA-CN ICGC
chr19:1456113:1456128:[+] target - chr19:1456122-1456123 G>T LICA-CN ICGC
chr19:1456115:1456128:[+] target - chr19:1456119-1456120 G>T LICA-CN ICGC
chr19:1456115:1456128:[+] target - chr19:1456122-1456123 G>T LICA-CN ICGC