Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866023:139866039:[+] chr2:160066898:160066918:[+] nonBSJ supported Intron

circRNA 5':CCAC-GUC-UUCC-C-AACAA 3'


            ||| ||| |||| | ||||


target  3':UGUGUCAGUAAGGUGUUUGUC 5'

 -12.80 1 RIC-seq
chrX:139866620:139866661:[+] chr2:159857389:159857426:[+] nonBSJ supported Intron

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCU---UCCAGCAUCUGCUC-GUCU 3'


            ||||: |||| || ||||| |||||| || |||


target  3': UCAGGUU-UCGU-GAA-UCCCGUCACAGGUCG----CGUCCCAGU 5'

 -29.40 1 RIC-seq
chrX:139866620:139866688:[+] chr2:159857357:159857426:[+] nonBSJ supported Intron

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCU---UCCAGCAUCUGCUC-GUCUUCCAA--CA-----UCUCC--ACGUCUUCCAGCAUC 3'


            ||||: |||| || ||||| |||||| || ||| || |||| |||:|| |||:


target  3': UCAGGUU-UCGU-GAA-UCCCGUCACAGGUCG----CGUCCCAGUCACUACCGUCUACAAGAGUAAUGCGGA----CGUGA 5'

 -39.40 1 RIC-seq