Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866202:139866220:[+] chr2:158636977:158636993:[-] nonBSJ supported CDS

circRNA 5':AUCCGGGUCUUCCAGGAAA 3'


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target  3':AAGA-CCAUCUGCACCUU 5'

 -6.50 1 RIC-seq
chrX:139866490:139866498:[+] chr2:158636980:158636990:[-] nonBSJ supported CDS

circRNA 5':AGGU--ACGUC 3'


            ||| ||||


target  3':ACCAUCUGCAC 5'

 -6.00 2 RIC-seq
chrX:139866632:139866643:[+] chr2:158636977:158636988:[-] nonBSJ supported CDS

circRNA 5':AUCUCCAGGGCU 3'


            ||| :|:|


target  3':AAGACCAUCUGC 5'

 -4.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:158636977:158636988:[-] target - chr2:158636980-158636981 T>C LINC-JP ICGC
chr2:158636977:158636993:[-] target - chr2:158636980-158636981 T>C LINC-JP ICGC