Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865455:139865499:[+] chr2:232326394:232326439:[-] nonBSJ supported CDS

circRNA 5': CAUCUUCCAGACAAUCCAUGUCUUCCGGACAAUCCAUGUCUUCCA 3'


            ||||:||| || || :||:||| ||| ||||||||


target  3':AGUAGGAGGAGUGACAGUAGUAGGAGGAGAAGUAGUGACAGAAGGA 5'

 -40.80 1 RIC-seq
chrX:139865912:139865945:[+] chr2:232324966:232325007:[-] nonBSJ supported CDS

circRNA 5':AUCCA------GGUCUUCCAGCCAAUAUAUG-UCUU--CCUGA 3'


            |||| :| |||| ||| ||||


target  3':AAGGUUGUUUCUCUAACUUUCGGCAUCAGCCAAGACACGGAC 5'

 -13.20 1 RIC-seq
chrX:139866480:139866517:[+] chr2:232324965:232324995:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGGUACGUCUUCCAGAAAAUCCAC-GUCU 3'


            |||||||||||: |||| || |||


target  3':AAAGGUUGUUUCUCUAA-------CUUUC-GGCAUCAGC 5'

 -17.00 2 RIC-seq
chrX:139865388:139865445:[+] chr2:232325087:232325130:[-] nonBSJ supported Intron

circRNA 5':CCAGCG-ACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAG-AUAAUCCUGAGCUUCCA 3'


            ||||: ||| ||| |||: || |||| || ||| || |:|| |:||


target  3':AGUCGUGUGAUGUUAC-------AUUGUAG-UCCA-AA-GUCAUA-----AUUC-AGGGA 5'

 -19.90 2 RIC-seq
chrX:139866495:139866501:[+] chr2:232325125:232325130:[-] nonBSJ supported Intron

circRNA 5':CGUCUUC 3'


            |||::


target  3': CAGGGA 5'

 -3.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:232325087:232325130:[-] target - chr2:232325118-232325119 G>C EOPC-DE ICGC
chr2:232326394:232326439:[-] target - chr2:232326417-232326418 C>T LAML-KR ICGC