Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866453:139866488:[+] chr3:42680526:42680566:[+] nonBSJ supported CDS

circRNA 5':AAGGUACGUCUUCCAA--CAAAGG---UAUG-UCUUCCAACA 3'


            |:|:||:||||||| || || :|: |||| ||||


target  3':CUUCGUGUAGAAGGUGAGGUAACCCUUGUGAAAGAA-GUUGC 5'

 -27.70 2 RIC-seq
chrX:139866471:139866524:[+] chr3:42680526:42680566:[+] nonBSJ supported CDS

circRNA 5':AAGGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACG-UCUUCCAACC 3'


            |:|:|::||||||| :|||| ||| |||| ||||


target  3':CUUCGUGUAGAAGGU-------------GAGGUAACCCUUGUGAAAGAA-GUUGC 5'

 -30.30 1 RIC-seq
chrX:139866471:139866529:[+] chr3:42680522:42680566:[+] nonBSJ supported CDS

circRNA 5':AAGGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACG-UCUUCCAACCAAGCC 3'


            |:|:|::||||||| :|||| ||| |||| |||| ||


target  3':CUUCGUGUAGAAGGU-------------GAGGUAACCCUUGUGAAAGAA-GUUGCA-CGA 5'

 -31.00 27 RIC-seq
chrX:139866489:139866513:[+] chr3:42680546:42680566:[+] nonBSJ supported CDS

circRNA 5':AAGGUACGUCUUCCAGAAAAUCCAC 3'


            |:|:||:||||||| ||||


target  3':CUUCGUGUAGAAGGUG----AGGUA 5'

 -22.60 1 RIC-seq