Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866594:139866648:[+] chr3:69221045:69221096:[-] nonBSJ supported CDS

circRNA 5':ACAAAUCCAUGUCU----UC-CUAUAUCUCCAGG---UCUUCCAGCAUCUCCAGGGCUUCCAG 3'


            |||| |||| || |||: |||||||| ||||||||| || |||||


target  3':GGUUUUCU--CAGAGACGAGUGAUG-AGAGGUCCAACAGAAGGUCGA-------CCAAAGGU 5'

 -42.40 3 RIC-seq
chrX:139866600:139866648:[+] chr3:69221040:69221096:[-] nonBSJ supported CDS

circRNA 5':CCAUGUC-------------UUC-CUAUAUCUCCAGG---UCUUCCAGCAUCUCCAGGGCUUCCAG 3'


            ||||:| :|| |||: |||||||| ||||||||| || |||||


target  3':AGUACGGUUUUCUCAGAGACGAGUGAUG-AGAGGUCCAACAGAAGGUCGA-------CCAAAGGU 5'

 -43.50 1 RIC-seq
chrX:139866624:139866649:[+] chr3:69360432:69360458:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAU-CUCCAGGGCUUCCAGC 3'


            |||||: || |||| ||| |||


target  3':UAAGGUUUUAUGAGGAAAAGAAAGUCC 5'

 -16.30 1 RIC-seq
chrX:139866630:139866666:[+] chr3:69360417:69360457:[-] nonBSJ supported CDS

circRNA 5':GCAUCUCCAG--GGC-UUCCAGCAU-CUGCUCGUCUUCCAA 3'


            ||||| | |||||: || || || |||| ||


target  3':AGUAGAUACUUACAAUAAGGUUUUAUGAGGAAAAGAAAGUC 5'

 -16.90 15 RIC-seq
chrX:139866636:139866686:[+] chr3:69221040:69221088:[-] nonBSJ supported CDS

circRNA 5':CCAGGGCUUCC--AGCAUCUGCUCGUCUUCCAACAUCUCCAC---GUCUUCCAGCA 3'


            || ||: || |||||||: || || |||||| ||||||||||


target  3':AGUA-CGGUUUUCUCAGAGACGAGU-GA----UG-AGAGGUCCAACAGAAGGUCGA 5'

 -43.10 1 RIC-seq
chrX:139866640:139866685:[+] chr3:69221043:69221088:[-] nonBSJ supported CDS

circRNA 5':GGCUUCC--AGCAUCUGCUCGUCUUCCAACAUCUCCAC---GUCUUCCAGC 3'


            ||: || |||||||: || || |||||| ||||||||||


target  3':ACGGUUUUCUCAGAGACGAGU-GA----UG-AGAGGUCCAACAGAAGGUCGA 5'

 -41.50 3 RIC-seq
chrX:139866640:139866686:[+] chr3:69221043:69221088:[-] nonBSJ supported CDS

circRNA 5':GGCUUCC--AGCAUCUGCUCGUCUUCCAACAUCUCCAC---GUCUUCCAGCA 3'


            ||: || |||||||: || || |||||| ||||||||||


target  3':ACGGUUUUCUCAGAGACGAGU-GA----UG-AGAGGUCCAACAGAAGGUCGA 5'

 -42.80 27 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:69360417:69360457:[-] target - chr3:69360425-69360426 G>A LINC-JP ICGC