Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865887:139865930:[+] chr3:196663732:196663766:[-] nonBSJ supported 3UTR

circRNA 5':AGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGC-CAA 3'


            ||| ||| |:|| || |||||||| ||


target  3':ACAGGAAAUUAUUGAAAGUCU---------CC-GAAGGUCGAGUC 5'

 -24.00 4 RIC-seq
chrX:139866204:139866217:[+] chr3:196669081:196669093:[-] nonBSJ supported 5UTR

circRNA 5':CCGGGUCUUCCAGG 3'


            ||:| |:|||||


target  3':CGCUC-GGAGGUCA 5'

 -16.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865887:139865930:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC