Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866477:139866505:[+] chr3:107447771:107447806:[+] nonBSJ supported CDS

circRNA 5':UGUC-UUCCAA-------CAAAGGUACGUCUUCCAGA 3'


            |:| |||||| | |||:| |||| |||


target  3':UCGGUAAGGUUUCAAUUCGACUCCGUAAAGAA-GUCA 5'

 -18.60 1 RIC-seq
chrX:139866477:139866519:[+] chr3:107447758:107447806:[+] nonBSJ supported CDS

circRNA 5':UGUC-UUCCAA-------CAAAGGUACGUCUUCCAGAAAAUCCACGUCUUC 3'


            |:| |||||| | |||:| |||| ||| ||||


target  3':UCGGUAAGGUUUCAAUUCGACUCCGUAAAGAA-GUCAGAAACGAA-AGAAC 5'

 -19.30 5 RIC-seq
chrX:139866477:139866528:[+] chr3:107447745:107447806:[+] nonBSJ supported CDS

circRNA 5':UGUC-UUCCAA-------CAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAAC----CAAGC 3'


            |:| |||||| | |||:| |||| ||| |||| ||||


target  3':UCGGUAAGGUUUCAAUUCGACUCCGUAAAGAA-GUCAGAAACGAA-AGAACCCCGAACCGUUCA 5'

 -19.40 43 RIC-seq