Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865454:139865498:[+] chr3:180685889:180685926:[+] nonBSJ supported CDS

circRNA 5':ACAUCUUCCAGACAAUCCAUGUCUUCCGGA-CAAUC---CAUGUCUUCC 3'


            ||||||| ||| ||:| || ||||| || || ||


target  3':AGUAGAAG-------AGG-ACGGUUA--CUGGUUAGUGAGUCGAGCAG 5'

 -20.70 1 RIC-seq
chrX:139865454:139865508:[+] chr3:180685891:180685926:[+] nonBSJ supported CDS

circRNA 5':ACAUCUUCCAGACAAUCCAUGUCUUCCGGA-CAAUCCAUGUCUUCCAAGAAGCUCC 3'


            ||||||| ||| ||:| || |||| ||: |||||


target  3':AGUAGAAG-------AGG-ACGGUUA--CUGGUUA-GUGAG---------UCGAGC 5'

 -23.80 5 RIC-seq
chrX:139865454:139865514:[+] chr3:180685889:180685926:[+] nonBSJ supported CDS

circRNA 5':ACAUCUUCCAGACAAUCCAUGUCUUCCGGA-CAAUCCAUGUCUUCCAAGAAGCUCCAAGUCU 3'


            ||||||| ||| ||:| || |||| ||: ||||| |||


target  3':AGUAGAAG-------AGG-ACGGUUA--CUGGUUA-GUGAG---------UCGAG---CAG 5'

 -25.30 30 RIC-seq