5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865354:139865407:[+] | chr3:49337909:49337964:[-] | nonBSJ supported | CDS |
circRNA 5':CCUGU-GUCAAGGUCUUCCAACAACUCCGGGU---CUUCCAGCGACUUCAAG--UCUUCC 3' |||: || |||| ||:|| |:|||| :|||: ||||| target 3':AGACGUCACUCCCAGUCGUCCUU---GGUCCUUUUGGAGGUA-UUGAGCUAGAAAGAAGU 5' |
-30.70 | 1 | RIC-seq |
| chrX:139865354:139865421:[+] | chr3:49337909:49337967:[-] | nonBSJ supported | CDS |
circRNA 5':CCUGU-GUCAAGGUCUUCCAACAACUCCGGGU---CUUCCAGCGACUUCAAGUCUUCCAAUAAUC-UCAAGGU 3' |||: || |||| ||:|| |:|||| :|||: :|||| || |||||| target 3':AGACGUCACUCCCAGUCGUCCUU---GGUCCUUUUGGAGGUA-UUGAGC--UAGAA-------AGAAGUUCC 5' |
-36.00 | 20 | RIC-seq |
| chrX:139865362:139865429:[+] | chr3:49337906:49337967:[-] | nonBSJ supported | CDS |
circRNA 5':AAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGU-CUUCCAAUAAUCUCAAGG--UCUUCCAGA 3' |||||| || ||||| ||| :||: |:||| |||| ||| ||||| || target 3': UCCAGAC----GUCACU-CCCAGUC-GUCCUUGGUCCUUUUGGAGG-UAUU-GAGCUAGAAAGAAGUUCC 5' |
-35.20 | 1 | RIC-seq |