Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865798:139865840:[+] chr3:134074755:134074808:[-] nonBSJ supported 3UTR

circRNA 5':AUCAGUGUCUUCCAGAAAGAAAUCCAGGU-CUUC---------CAGU-CAGUCA 3'


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target  3':GGGUCACCUUACG-CCGUCGUUAGGACCAUGUCCCACCGUAUUGUUUUGUCGGUA 5'

 -19.90 1 RIC-seq
chrX:139865798:139865843:[+] chr3:134074755:134074811:[-] nonBSJ supported 3UTR

circRNA 5':AUCAGUGUCUUCCAGAAAGAAAUCCAGGU-CUUC---------CAGU-CAGUCA-GUG 3'


            |||||| | || ||||| ||| | ||: |||:|| ||


target  3':GGGUCACCUUACG-CCGUCGUUAGGACCAUGUCCCACCGUAUUGUUUUGUCGGUACAA 5'

 -21.20 20 RIC-seq
chrX:139865817:139865843:[+] chr3:134074773:134074811:[-] nonBSJ supported 3UTR

circRNA 5':AAAUCCAGGU-CUUC---------CAGU-CAGUCA-GUG 3'


            ||||| ||| | ||: |||:|| ||


target  3':GUUAGGACCAUGUCCCACCGUAUUGUUUUGUCGGUACAA 5'

 -14.00 2 RIC-seq