Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865742:139865796:[+] chr5:176884144:176884219:[-] nonBSJ supported 3UTR

circRNA 5':UCUA-GAUCUU--CCAGU-------------------CAAUCAGUGUCUU-----CCAGAAAGAAAUCCAGGUCUUCCAGUC 3'


            ||| :|||| |||| ||| |||:||||: |||: ||| || ||||||


target  3':CGAUGUUAGACCUGGUCCCUUCCUCCCCACCUUAAACGUU-GUCGCAGAGUUGAUGGUUGCUCU------CCUUUCGGUCAGU 5'

 -31.80 1 RIC-seq
chrX:139865753:139865818:[+] chr5:176884142:176884207:[-] nonBSJ supported 3UTR

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUU-----CCAGAAAGAA 3'


            ||: ||:| | |||| ||| ||| ||| |||:||||: |||: |||


target  3':CUCGAU--GUUAGACCUGGUCC--CUUCCUCCCCACCUUAAACGUU-GUCGCAGAGUUGAUGGUUGCUCUC 5'

 -28.90 1 RIC-seq
chrX:139865495:139865513:[+] chr5:176895845:176895862:[-] nonBSJ supported 5UTR

circRNA 5':UUCCAAGAAGCUCCAAGUC 3'


            ||| || ||| ||||:


target  3':GAGGA-CUACGACGUUCGA 5'

 -13.10 1 RIC-seq
chrX:139866676:139866710:[+] chr5:176894027:176894058:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCAUCUCUGUGUCUUCC--AGCAUCUUCA 3'


            |||||| || :|||: :||||| ||| |||||


target  3': AGAAGG-CGAGGAGGA--GGAAGGCGUCG-AGAAGA 5'

 -32.50 2 RIC-seq