Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865654:139865690:[+] chr5:146773180:146773213:[-] nonBSJ supported 3UTR

circRNA 5':GAUCUUCCAGCUAA-UCCAUGUCUUCCAGAAAAAUCUG 3'


            |:|:|||| || |||| | ||:||| |:|:


target  3':GUGGGAGGUGGAACGAGGUCC-GAGGGUGG---UGGGU 5'

 -29.10 1 RIC-seq
chrX:139866369:139866431:[+] chr5:146798022:146798080:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAA-GCCAUGUCU---UCCAUCAAAUUAAUGUCUUCCAGCCUACUUGU-GUC-UUCCA 3'


            |:| || | || ||| |:|| ||| ||| |||| ||| ||| ||||


target  3':ACGGU-GGACGAUUCCGG--CGGAAACAGGGAACCUUCUU-CAGUA-----GAUG-ACACCAGUAAGGG 5'

 -26.30 1 RIC-seq
chrX:139866413:139866431:[+] chr5:146798022:146798049:[-] nonBSJ supported CDS

circRNA 5':AGCCUACUUGU-------GUCU---UCCA 3'


            ||| ||:||: |:|| |||


target  3':ACGG-UGGACGAUUCCGGCGGAAACAGGG 5'

 -15.80 1 RIC-seq
chrX:139866454:139866492:[+] chr5:146804445:146804478:[-] nonBSJ supported CDS

circRNA 5':AGGUACGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGG 3'


            ||: |:||||||| ||:|| || |||||


target  3': UCG-GUAGAAGGUACAUU---UAUAGUC-GUAUUUUCCU 5'

 -18.80 2 RIC-seq
chrX:139866620:139866659:[+] chr5:146792212:146792248:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGU 3'


            ||:| :||||| ||||| :||| |||:|


target  3':ACCGG-GGGUCG-AGAGGGUCCGUCCACUUCUA--GAGUAU 5'

 -35.30 2 RIC-seq
chrX:139866731:139866751:[+] chr5:146788291:146788308:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAUCAACUGGCUCAA 3'


            ||||| || |||||


target  3':GAGAAGACCG--GA-CGAGUC 5'

 -12.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:146798022:146798049:[-] target - chr5:146798035-146798036 G>A LICA-CN ICGC
chr5:146798022:146798049:[-] target - chr5:146798039-146798040 G>A COCA-CN ICGC
chr5:146798022:146798080:[-] target - chr5:146798035-146798036 G>A LICA-CN ICGC
chr5:146798022:146798080:[-] target - chr5:146798039-146798040 G>A COCA-CN ICGC