Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866564:139866585:[+] chr5:142680116:142680151:[-] nonBSJ supported CDS

circRNA 5':AUAUG-UCUUCCA-------------ACUAAGCUAC 3'


            |||| ||:|||| || |||||


target  3':AGUACUAGGAGGUUCAACUCAGACCUUGUCUCGAUA 5'

 -15.50 1 RIC-seq
chrX:139866564:139866593:[+] chr5:142680116:142680159:[-] nonBSJ supported CDS

circRNA 5':AUAUG-UCUUCCA-------------ACUAAGCUA-CGUCUUCCA 3'


            |||| ||:|||| || ||||| |:| |||


target  3':AGUACUAGGAGGUUCAACUCAGACCUUGUCUCGAUAGUAU-AGGA 5'

 -20.80 2 RIC-seq
chrX:139866564:139866632:[+] chr5:142680116:142680192:[-] nonBSJ supported CDS

circRNA 5':AUAUG-UCUUCCAACUAAGCUACGUCUUCCAACAAAUC---CAUGUCUU-CCUAUAU--CUCCAGGU-------CUUCCAGCA 3'


            |||| ||:|||| || |||| |||| |||:||:| | |||| || ||||| |:||||:|


target  3':AGUACUAGGAGGU----UCAACUCAGACC-UUGUCUCGAUAGUAUAGGACGUAUAUUGUGAAGUCCAAGUUAUUGGAGGUUG 5'

 -38.80 1 RIC-seq
chrX:139866564:139866633:[+] chr5:142680116:142680193:[-] nonBSJ supported CDS

circRNA 5':AUAUG-UCUUCCAACUAAGCUACGUCUUCCAACAAAUC---CAUGUCUU-CCUAUAU--CUCCAGGU-------CUUCCAGCAU 3'


            |||| ||:|||| || |||| |||| |||:||:| | |||| || ||||| |:||||:||


target  3':AGUACUAGGAGGU----UCAACUCAGACC-UUGUCUCGAUAGUAUAGGACGUAUAUUGUGAAGUCCAAGUUAUUGGAGGUUGU 5'

 -39.30 34 RIC-seq
chrX:139866564:139866638:[+] chr5:142680116:142680191:[-] nonBSJ supported CDS

circRNA 5':AUAUG-UCUUCCAACUAAGCUACGUCUUCCAACAAAUC---CAUGUCUU-CCUAUAU--CUCCAGGUCUUCCAGCAUCUCCA 3'


            |||| ||:|||| || |||| |||| |||:||:| | |||| || ||||| || |:|||||


target  3':AGUACUAGGAGGU----UCAACUCAGACC-UUGUCUCGAUAGUAUAGGACGUAUAUUGUGAAGUCCA--AGUUAUUGGAGGUU 5'

 -36.70 2 RIC-seq
chrX:139866566:139866633:[+] chr5:142680117:142680193:[-] nonBSJ supported CDS

circRNA 5': AUG-UCUUCCAACUAAGCUACGUCUUCCAACAAAUC---CAUGUCUU-CCUAUAU--CUCCAGGU-------CUUCCAGCAU 3'


            ||| ||:|||| || |||| |||| |||:||:| | |||| || ||||| |:||||:||


target  3':GUACUAGGAGGU----UCAACUCAGACC-UUGUCUCGAUAGUAUAGGACGUAUAUUGUGAAGUCCAAGUUAUUGGAGGUUGU 5'

 -38.70 1 RIC-seq
chrX:139866600:139866626:[+] chr5:142680116:142680139:[-] nonBSJ supported CDS

circRNA 5':CCAUG-UCUUCCUAUAUCUCCAGGUCUU 3'


            |||| ||:||| :||||


target  3':AGUACUAGGAGGUUCAAC----UCAGAC 5'

 -15.30 1 RIC-seq
chrX:139866600:139866648:[+] chr5:142680116:142680154:[-] nonBSJ supported CDS

circRNA 5':CCAUG-UCUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAG 3'


            |||| ||:||| :|||| |||:||| ||


target  3':AGUACUAGGAGGUUCAAC----UCAGACCUU-------GUCUCGAUAGUA 5'

 -23.30 37 RIC-seq
chrX:139866620:139866648:[+] chr5:142680119:142680154:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCA----UCUC---CAGGGCUUCCAG 3'


            |:||:||||: ||| |||:||| ||


target  3':ACUAGGAGGUUCAACUCAGACCUUGUCUCGAUAGUA 5'

 -22.40 1 RIC-seq
chrX:139865922:139865932:[+] chr5:142661082:142661093:[-] nonBSJ supported Intron

circRNA 5': UCCAGCCAAUA 3'


            |||||||||:


target  3':UAGGUCGGUUGA 5'

 -17.50 1 RIC-seq
chrX:139866208:139866217:[+] chr5:142661079:142661088:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAGG 3'


            || |||||


target  3':AAGUAGGUCG 5'

 -9.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:142680116:142680139:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680116:142680151:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680116:142680154:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680116:142680159:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680116:142680191:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680116:142680192:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680116:142680193:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680117:142680193:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chr5:142680119:142680154:[-] target 16151 chr5:142680121-142680122 A>T Glucocorticoid_resistance ClinVar
chrX:139866564:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866564:139866632:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866564:139866633:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866564:139866638:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866566:139866633:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC