Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866728:139866787:[+] chr5:141972514:141972578:[-] nonBSJ supported 3UTR

circRNA 5':CCAGUCUUCCAU-CA-ACU-GG--CUCAAUAUCCA------UGUCUUCCAACGUCUCCAGUGUGCUGAUCU 3'


            |||: ||| || || || |:|| |||||| ||:|| ||: ||||: || |:||


target  3':CGUCGUUUGGUCUGUCUGUUCCAGGGGUCAUAGGUCAUGUCACGGAUCG-UGU----GUCAUCCG--UGGAA 5'

 -29.70 5 RIC-seq
chrX:139866741:139866782:[+] chr5:141972510:141972548:[-] nonBSJ supported 3UTR

circRNA 5':AACUGGCU-CAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCU 3'


            || :|| ||| ||| | | ||| |||:|||||:| |


target  3':AUG-UCGUCGUUU--GGU-CUGUCUGUUCCAGGGGUCAUAGGU 5'

 -27.80 3 RIC-seq
chrX:139866352:139866376:[+] chr5:142065574:142065609:[-] nonBSJ supported 5UTR

circRNA 5': GUCUUCC----AGCA-AAUCCAC-----GUCUUCC 3'


            |||:: |||| ||||||| ||||||


target  3':ACAGGGUCCCCUUCGUCUUAGGUGAACCACAGAAGA 5'

 -22.40 14 RIC-seq
chrX:139866354:139866376:[+] chr5:142065575:142065609:[-] nonBSJ supported 5UTR

circRNA 5':CUUCC------AGCA-AAUCCAC-----GUCUUCC 3'


            |:|| |||| ||||||| ||||||


target  3':CAGGGUCCCCUUCGUCUUAGGUGAACCACAGAAGA 5'

 -21.00 3 RIC-seq