Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865961:139865999:[+] chr5:133488623:133488662:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCAUGUCUUCCAGAAAAU-CCAUGUCUU--CCAGU 3'


            |||| |||||||| ||| ||||


target  3':CCUUU--GGUACAGAUUACGAAGGAUGGUUCCUCUUCGGUCC 5'

 -19.40 1 RIC-seq
chrX:139865961:139866010:[+] chr5:133488623:133488661:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUC-------CCAGU 3'


            |||| |||||||| ||| ||||| ||| ||||


target  3':CCUUU--GGUACAGAU-----------UAC-GAAGGA---UGGUUCCUCUUCGGUC 5'

 -21.50 1 RIC-seq
chrX:139865961:139866017:[+] chr5:133488623:133488662:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCAGUCUUCCAG 3'


            |||| |||||||| ||| ||||| ||| || ||||


target  3':CCUUU--GGUACAGAU-----------UAC-GAAGGA---UGGUUCCUCUUC-GGUCC 5'

 -23.80 11 RIC-seq
chrX:139865961:139866018:[+] chr5:133488623:133488662:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCAGUCUUCCAGA 3'


            |||| |||||||| ||| ||||| ||| || ||||


target  3':CCUUU--GGUACAGAU-----------UAC-GAAGGA---UGGUUCCUCUUC-GGUCC 5'

 -25.00 13 RIC-seq