Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866310:139866369:[+] chr5:100191890:100191935:[-] nonBSJ supported CDS

circRNA 5':AUCCAUA-GCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCA--AAUCCAC 3'


            ||||: ||||| ||:||| ||:|| |||| ||||||


target  3':GAGGUGCACGAAGAG-----------AGGAGGAAACU--GGUACUU----UCGUCCUUAGGUU 5'

 -30.30 2 RIC-seq
chrX:139866351:139866389:[+] chr5:100191877:100191921:[-] nonBSJ supported CDS

circRNA 5': UGUCUU--CCAGCAAAUCCACG--------UCUUCCAACAAAGCCAUGU 3'


            ||: || :| |||||| ||:||| :|||||


target  3':UACGUAAUUGGGUG---AGGUGCACGAAGAGAGGAGGAAAC--UGGUACU 5'

 -23.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866310:139866369:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC